Table 4 Annotation result for SNPs in the Tibetan sheep populations.
From: Whole-genome variant of 220 Tibetan sheep from the Qinghai-Tibetan Plateau
Catcgory | AW | GB | GBB | GJ | HB | KC | OL | QK | TS | WT | ZSJ |
|---|---|---|---|---|---|---|---|---|---|---|---|
exonic-nonsynonymous | 41,250 | 42,044 | 41,674 | 42,614 | 42,354 | 42,955 | 42,439 | 41,065 | 41,376 | 43,687 | 42,013 |
exonic-synonymous | 71,622 | 72,846 | 72,247 | 73,496 | 73,507 | 74,274 | 73,649 | 71,312 | 71,959 | 75,324 | 72,808 |
exonic-startloss/stopgain/loss | 1,038 | 1,062 | 1,039 | 1,088 | 1,077 | 1,072 | 1,070 | 1,037 | 1,028 | 1,096 | 1,062 |
exonic-unknown | 1,269 | 1,290 | 1,280 | 1,303 | 1,301 | 1,298 | 1,282 | 1,230 | 1,272 | 1,344 | 1,277 |
intronic | 6,122,920 | 6,293,405 | 6,208,376 | 6,332,554 | 6,295,737 | 6,357,533 | 6,323,299 | 6,124,934 | 6,234,045 | 6,473,080 | 6,242,532 |
splicing | 483 | 477 | 482 | 492 | 491 | 498 | 485 | 470 | 481 | 504 | 487 |
UTR3/UTR5 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
up/downstream | 201,370 | 205,852 | 203,485 | 208,194 | 207,676 | 208,614 | 207,457 | 201,088 | 203,951 | 212,304 | 204,694 |
intergenic | 11,917,492 | 12,231,525 | 12,092,829 | 12,350,508 | 12,227,833 | 12,318,005 | 12,310,123 | 11,936,580 | 12,154,590 | 12,572,495 | 12,156,930 |
Total SNPs | 18,357,446 | 18,848,503 | 18,621,414 | 19,010,251 | 18,849,978 | 19,004,251 | 18,959,806 | 18,377,718 | 18,708,704 | 19,379,836 | 18,721,805 |