Table 3 Statistics of F. macrophylla genome assembly and annotation.
From: Chromosome-scale genome assembly of Flemingia macrophylla
Assembly feature | |
|---|---|
Estimated genome size (Gb) | 1.07 |
Assembly size (Gb) | 1.13 |
Scaffold N50 (Mb) | 105.36 |
Contig N50 (Mb) | 68.75 |
Anchor ratio (%) | 93.29 |
GC content (%) | 35.45 |
BUSCO (%) | 96.90 |
LAI | 14.31 |
Gene prediction | |
Number of protein-coding genes | 28,548 |
Average gene length (bp) | 4,820.50 |
Average CDS length (bp) | 1,342.45 |
Average single exon length (bp) | 297.48 |
Average single intron length (bp) | 701.20 |
Functional annotation | |
NR | 19,456 (68.15%) |
GO | 21,624 (75.75%) |
KEGG | 12,867 (45.07%) |
eggNOG | 27,104 (94.94%) |
InterPro | 25,902 (90.73%) |
Swiss-Prot | 20,746 (72.67%) |
Total | 27,936 (97.86%) |
Non-coding RNA annotation | |
miRNAs | 124 (0.0014) |
sRNAs | 8 (0.00014) |
snRNAs | 2,265 (0.02273) |
tRNAs | 583 (0.00404) |
rRNAs | 1,116 (0.02082) |
