Table 5 List of repetitive elements obtained through annotation.
From: Chromosome-level genome assembly and annotation of the tropical sea cucumber Bohadschia ocellate
TE_subtype | Denovo + Repeat Masker | Denovo | Repeat Masker | |||
|---|---|---|---|---|---|---|
length (bp) | length/genome (%) | length (bp) | length/genome (%) | length (bp) | length/genome (%) | |
DNA | 123,401,780 | 13.57 | 123,199,456 | 13.55 | 237,935 | 0.03 |
LINE | 39,336,952 | 4.33 | 38,465,856 | 4.23 | 1,949,572 | 0.21 |
LTR | 8,253,641 | 0.91 | 8,069,798 | 0.89 | 292,353 | 0.03 |
SINE | 212,947 | 0.02 | 0.00 | 0.00 | 212,947 | 0.02 |
Simple_repeat | 95,135 | 0.01 | 0.00 | 0.00 | 95,135 | 0.01 |
Unknown | 149,528,312 | 16.45 | 149,525,665 | 16.45 | 2,902 | 0.00 |
Total | 311,911,667 | 34.31 | 310,739,945 | 34.18 | 279,1331 | 0.31 |
