Abstract
We present a unique dataset of historical tropical tree phenology observations at two sites from different bioclimatic regions across the Congo Basin. We cover both the Atlantic Mayombe forest and the tropical forest in the central Congo Basin. To our knowledge this is the complete extant historical (1937–1957) phenology data across the Congo basin. The data contains ~10 million observations of 876 species, across 6339 individuals, and phenology metrics including leaf, flowering, and fruiting phenology. The data were recovered through expert transcription and validated community science based crowdsourcing. These data may provide a reference baseline and key information on how tree species are responding to a changing climate.
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Data availability
The manuscript’s database is made available as a Zenodo Digital Repository (https://doi.org/10.5281/zenodo.16789580). The original digitized tables, and the citizen science (raw) transcriptions are available as zipped archives (https://doi.org/10.5281/zenodo.14906306 and, https://doi.org/10.5281/zenodo.14900505 respectively).
Code availability
The code and workflow used during ‘Jungle Rhythms’ community science project are available as an R project (https://doi.org/10.5281/zenodo.7650294).
References
Richardson, A. D. et al. Climate change, phenology, and phenological control of vegetation feedbacks to the climate system. Agric. For. Meteorol. 169, 156–173 (2013).
Parmesan, C. & Yohe, G. A globally coherent fingerprint of climate change impacts across natural systems. Nature 421, 37–42 (2003).
Penuelas, J. & Filella, I. PHENOLOGY: Responses to a Warming World. Science 294, 793–795 (2001).
Lewis, S. L. Tropical forests and the changing earth system. 195–210, https://doi.org/10.1098/rstb.2005.1711 (2006).
Lewis, S. L. et al. Increasing carbon storage in intact African tropical forests. Nature 457, 1003–1006 (2009).
Pan, Y. et al. A Large and Persistent Carbon Sink in the World’s Forests. Science 333, 988–993 (2011).
Bush, E. R. et al. Long-term collapse in fruit availability threatens Central African forest megafauna. Science 370, 1219–1222 (2020).
van Schaik, C. P., Terborgh, J. W. & Wright, S. J. The Phenology of Tropical Forests: Adaptive Significance and Consequences for Primary Consumers. Annu. Rev. Ecol. Syst. 24, 353–377 (1993).
Reich, P. B. Key canopy traits drive forest productivity. Proc. R. Soc. B Biol. Sci. 279, 2128–2134 (2012).
Abernethy, K., Bush, E. R., Forget, P., Mendoza, I. & Morellato, L. P. C. Current issues in tropical phenology: a synthesis. Biotropica 50, 477–482 (2018).
Kearsley, E. et al. Historical tree phenology data reveal the seasonal rhythms of the Congo Basin rainforest. Plant-Environ. Interact. 5, e10136 (2024).
Guan, K. et al. Photosynthetic seasonality of global tropical forests constrained by hydroclimate. Nat. Geosci. 8, 284–289 (2015).
Liu, L. et al. Solar Radiation Triggers the Bimodal Leaf Phenology of Central African Evergreen Broadleaved Forests. J. Adv. Model. Earth Syst. 16, e2023MS004014 (2024).
Wright, S. J. & Calderón, O. Seasonal, El Niño and longer term changes in flower and seed production in a moist tropical forest. Ecol. Lett. 9, 35–44 (2006).
Bush, E. R. et al. Fourier analysis to detect phenological cycles using long-term tropical field data and simulations. Methods Ecol. Evol. 8, 530–540 (2017).
Davis, C. C. et al. New directions in tropical phenology. Trends Ecol. Evol. 37, 683–693 (2022).
Lewis, S. L. & Maslin, M. A. Defining the Anthropocene. Nature 519, 171–180 (2015).
Sibret, T. et al. CongoFlux – The First Eddy Covariance Flux Tower in the Congo Basin. Front. Soil Sci. 2, 883236 (2022).
Van Wambeke, A., Evrard, C.-M., Gilson, P. & Liben, L. Yangambi. (Bruxelles: INEAC, 1954).
Hufkens, K. et al. Historical Aerial Surveys Map Long-Term Changes of Forest Cover and Structure in the Central Congo Basin. Remote Sens. 12, 638 (2020).
Malhi, Y. & Wright, J. Spatial patterns and recent trends in the climate of tropical rainforest regions. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 359, 311–329 (2004).
Kasongo Yakusu, E. et al. Ground-based climate data show evidence of warming and intensification of the seasonal rainfall cycle during the 1960–2020 period in Yangambi, central Congo Basin. Clim. Change 176, 142 (2023).
van Engelen, V. W. P., Verdoodt, A., Dijkshoorn, J. A. & van Ranst, E. Soil and Terrain Database of Central Africa (DR Congo, Burundi, Rwanda) Rwanda (SOTERCAF, Version 1.0). (ISRIC, Wageningen, 2006).
Batjes, N. et al. The Harmonized World Soil Database. (FAO, Rome, 2010).
Couralet, C. Community dynamics, phenology and growth of tropical trees in the rain forest reserve of Luki, Democratic Republic of Congo. (Ghent University, Ghent, 2010).
Couralet, C., Sterck, F. J., Sass-Klaassen, U., Van Acker, J. & Beeckman, H. Species-specific growth responses to climate variations in understory trees of a central african rain forest. Biotropica 42, 503–511 (2010).
Witboek/Livre Blanc II - Wetenschappelijke Bijdrage van België Tot de Ontwikkeling van Centraal-Afrika - Apport Scientifique de La Belgique Au Développement de l’Afrique Centrale, 2. Sciences Naturelles et Médicales / Natuur- En Geneeskundige Wetenschappen. (Koninklijke Academie voor Overzeese Wetenschappen, 1962).
Capon, M. Observations sur la phénologie des essences de la forêt de Yangambi. C. R. Semaine Agricole de Yangambi. in Publ. INEAC, hors série 849 (1947).
Couralet, C., Van Den Bulcke, J., Ngoma, L. M., Van Acker, J. & Beeckman, H. Phenology in functional groups of central african rainforest trees. J. Trop. For. Sci. 25, 361–374 (2013).
Hufkens, K. et al. Historical tree phenology data across contrasting sites in the Congo Basin. Zenodo https://doi.org/10.5281/ZENODO.17427652 (2025).
Pierlot, R. Structure et composition de forêts denses d’Afrique Centrale, spécialement celles du Kivu. vol. XIV–4 (Koninklijke Academie voor Overzeese Wetenschappen, Brussels, Belgium, 1966).
van Rijsbergen, C. J. Information Retrieval. (Butterworths, London, 1979).
Acknowledgements
Historical phenological data recovery was supported by the Institut National pour l’Étude et la Recherche Agronomiques (INERA). Initial digitization was funded through the COBIMFO project funded by the Belgian Science Policy Office (Belspo; contract no. SD/AR/01 A). We thank all citizen scientists for their combined efforts in transcribing data in the “Jungle Rhythms” Zooniverse project. Postdoctoral funding for EK was granted by the BOF Special Research Fund, Ghent University, Belgium. KH acknowledges funding through the Belgian Science Policy office COBECORE project (BELSPO; grant BR/175/A3/COBECORE), the European Union Marie Skłodowska-Curie Action (project number 797668) and the NSF Macrosystems Biology programme (Award Numbers: EF-1065029) in supporting transcription efforts. Consolidation and post-processing of the data was funded by BlueGreen Labs (BV).
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K.H. supervised and led phenological data recovery of the Yangambi phenology data with support of E.R.K. and E.K.Y. M.K. supported the Zooniverse community science project setup. H.B., and J.V.d.B. supervised the Luki data recovery. E.K., T.D.M., P.S. and S.J. assembled critical species meta-data. E.K. and K.H. performed data analysis and wrote the first draft of the paper. All authors provided valuable insights, logistical and political support. All authors read and commented on the manuscript.
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Hufkens, K., Kearsley, E., Stoffelen, P. et al. Historical tree phenology data across contrasting sites in the Congo Basin. Sci Data (2026). https://doi.org/10.1038/s41597-025-06542-z
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DOI: https://doi.org/10.1038/s41597-025-06542-z


