Table 5 Transposable elements annotated in the genome of D132.
From: Chromosome-level genome assemblies of two maize inbred lines with contrasting plant architectures
Classification | Number | Length (bp) | Percentage (%) |
|---|---|---|---|
Class I: Retroelement | 827,942 | 1,636,418,045 | 75.52 |
LTR Retroelement | 804,511 | 1,620,479,625 | 74.78 |
Copia | 288,985 | 575,935,638 | 26.58 |
Gypsy | 381,212 | 962,598,968 | 44.42 |
other | 134,314 | 81,945,019 | 3.78 |
non-LTR retrotransposon | 23,431 | 15,938,420 | 0.74 |
LINE1 | 19,052 | 13,871,321 | 0.64 |
RTE | 4379 | 2,067,099 | 0.10 |
Class II: DNA transposon | 307,638 | 129,004,651 | 5.94 |
hAT | 97,609 | 27,369,632 | 1.26 |
CACTA | 80,949 | 60,670,302 | 2.80 |
Tc1/Mariner | 24,065 | 3,353,550 | 0.15 |
Mutator | 32,191 | 19,654,971 | 0.91 |
PIF/Harbinger | 89,325 | 17,441,948 | 0.80 |
Helitron | 5196 | 514,248 | 0.02 |
