Table 4 Repeat composition of Paracondylactis sinensis genome.
From: Chromosome-scale genome of the burrowing sea anemone Paracondylactis sinensis
Category | Count | bp covered | Percentage (%) |
|---|---|---|---|
DNA transposons | 4700 | 3427586 | 1.627 |
Maverick | 234 | 465533 | 0.221 |
Crypton | 1730 | 387795 | 0.184 |
Crypton-A | 524 | 338800 | 0.161 |
hAT-Ac | 414 | 171073 | 0.081 |
hAT-Tip100 | 123 | 148854 | 0.071 |
TcMar-Tc1 | 113 | 133544 | 0.063 |
CMC-Chapaev | 26 | 101876 | 0.048 |
Sola-3 | 41 | 83869 | 0.040 |
Kolobok-T2 | 54 | 68717 | 0.033 |
Merlin | 8 | 67868 | 0.032 |
PIF-Harbinger | 71 | 64255 | 0.031 |
hAT-hAT5 | 239 | 39889 | 0.019 |
P | 50 | 36838 | 0.017 |
TcMar-ISRm11 | 56 | 20247 | 0.010 |
Academ-1 | 4 | 15592 | 0.007 |
CMC-EnSpm | 11 | 13745 | 0.007 |
Academ-H | 19 | 8419 | 0.004 |
Helitron | 715 | 1131084 | 0.537 |
Unclassified | 268 | 129588 | 0.062 |
LTR | 15311 | 5114151 | 2.428 |
Ngaro | 8094 | 1716681 | 0.815 |
Unknown | 2755 | 1311486 | 0.623 |
Gypsy | 129 | 309022 | 0.147 |
Pao | 496 | 266029 | 0.126 |
ERVK | 45 | 49418 | 0.023 |
ERV1 | 26 | 1732 | 0.001 |
Unclassified | 3766 | 1459783 | 0.693 |
LINE | 2893 | 1532878 | 0.728 |
L2 | 1035 | 652716 | 0.310 |
Penelope | 1214 | 417362 | 0.198 |
L1 | 241 | 256984 | 0.122 |
CRE | 158 | 83930 | 0.040 |
Rex-Babar | 72 | 35492 | 0.017 |
CR1 | 65 | 24260 | 0.012 |
L1-Tx1 | 18 | 16409 | 0.008 |
Dong-R4 | 19 | 10820 | 0.005 |
RTE-BovB | 35 | 8122 | 0.004 |
Unclassified | 36 | 26783 | 0.013 |
SINE | 442 | 78230 | 0.037 |
MIR | 301 | 57613 | 0.027 |
tRNA-Deu | 51 | 11171 | 0.005 |
B2 | 90 | 9446 | 0.004 |
Unknown | 179511 | 32960837 | 15.649 |
Low complexity | 16948 | 1162779 | 0.552 |
Simple repeat | 105464 | 8898344 | 4.225 |
Satellite | 37 | 37095 | 0.018 |
rRNA | 1005 | 2465081 | 1.170 |
Total | 146800 | 22716144 | 26.434 |
