Table 2 De novo assembly results for each organ (leaf, stem, root) before and after each step of data processing, including the final version (merged and non-redundant).
From: De novo transcriptome assembly of the Moroccan fir, Abies marocana Trab
Leaves | Stem | Roots | ||
|---|---|---|---|---|
Number of sequences | Original | 154,369 | 216,300 | 250,817 |
Filtered | 92,847 | 142,714 | 151,117 | |
SuperTranscripts | 71,877 | 115,671 | 123,847 | |
Final | 279,439 | |||
Total length (bp) | Original | 129,443,608 | 160,861,073 | 179,692,306 |
Filtered | 78,200,199 | 103,257,948 | 108,502,878 | |
SuperTranscripts | 53,112,715 | 71,035,415 | 77,182,602 | |
Final | 162,362,097 | |||
Average length (bp) | Original | 838.5 | 743.7 | 716.4 |
Filtered | 842.2 | 723.5 | 718.0 | |
SuperTranscripts | 738.9 | 614.1 | 622.7 | |
Final | 581.0 | |||
