Table 2 Trichoderma strain included in the multi-gene sequence analysis, with details of clade, strain number, location, and GenBank accessions of the sequences generated.
From: Diversity of Trichoderma species associated with soil in the Zoige alpine wetland of Southwest China
Species | Clade | Strain | Location | ITS | TEF | RPB2 | ACL1 | GPD |
|---|---|---|---|---|---|---|---|---|
Trichoderma aggressivum | Green/harzianum | CBS 100525 | UK: England | – | AF534614 | AF545541 | – | – |
T. alni | Green/harzianum | Hypo 254 = CBS 120633 (T) | UK: England | EU518651 | EU498312 | EU498349 | KJ664942 | – |
C.P.K. 2494 | – | – | EU498313 | EU498350 | – | – | ||
C.P.K. 2854 | – | – | EU498314 | EU498351 | – | – | ||
C.P.K. 2858 | – | – | EU498315 | – | – | – | ||
T16 | China | KX632517 | KX632574 | KX632631 | KX632688 | KX632745 | ||
T24 | China | KX632518 | KX632575 | KX632632 | KX632689 | KX632746 | ||
T28 | China | KX632519 | KX632576 | KX632633 | KX632690 | KX632747 | ||
T36 | China | KX632520 | KX632577 | KX632634 | KX632691 | KX632748 | ||
T40 | China | KX632521 | KX632578 | KX632635 | KX632692 | KX632749 | ||
T41 | China | KX632522 | KX632579 | KX632636 | KX632693 | KX632750 | ||
T53 | China | KX632523 | KX632580 | KX632637 | KX632694 | KX632751 | ||
T54 | China | KX632524 | KX632581 | KX632638 | KX632695 | KX632752 | ||
T. amazonicum | Green/harzianum | IB 95 | Peru | – | HM142377 | HM142368 | – | – |
T. atrobrunneum | Green/harzianum | G.J.S. 90-254 | Germany | – | AF443943 | FJ442735 | KJ664942 | – |
Hypo 25 | Austria | – | KJ665359 | – | – | – | ||
S343 | Spain | – | KJ665383 | – | – | – | ||
S447 | Spain | – | KJ665396 | – | – | – | ||
Hypo 4 | Germany | – | KJ665365 | – | KJ664949 | – | ||
Hypo 182 | Germany | – | KJ665357 | – | KJ664948 | – | ||
T39 | China | KX632514 | KX632571 | KX632628 | KX632685 | KX632742 | ||
T42(CGMCC 3.20167) | China | KX632515 | KX632572 | KX632629 | KX632686 | KX632743 | ||
T57 | China | KX632516 | KX632573 | KX632630 | KX632687 | KX632744 | ||
T. brunneoviride | Green/harzianum | CBS 120928 | Austria | EU518661 | EU498318 | EU498358 | – | – |
CBS 121130 (T) | Germany | – | EU498316 | – | – | – | ||
T. catoptron | Green/harzianum | G.J.S. 02-76 | Sri Lanka | AY737766 | AY391963 | AY391900 | KJ664969 | – |
T. ceraceum | Green/harzianum | G.J.S. 88-26 | USA | – | AY391964 | AY391901 | – | – |
T. cerinum | Green/harzianum | CBS 136992 = S357 | France | – | KF134797 | KF134788 | KJ664977 | – |
T. cinnamomeum | Green/harzianum | G.J.S. 97-230 = CBS 114235 (T) | USA | – | – | AY391918 | KJ664965 | – |
G.J.S. 97-237 | USA | AY737759 | AY391979 | AY391920 | – | – | ||
T. citrinoviride | Longibrachiatum | CBS 121275 = Hypo 162 | Germany | – | – | FJ860586 | KJ64978 | – |
C.P.K. 2005 | Austria | – | FJ860694 | – | – | – | ||
T. compactum | Green/harzianum | CBS 121218 (T) | China | – | KF134798 | KF134789 | KJ664984 | – |
T. corneum | Green/harzianum | G.J.S. 97-82 | Thailand | – | KJ665455 | KJ665252 | KJ664985 | – |
T. dacrymycellum | Green/harzianum | Hypo 233 = WU 29044 | Germany | FJ860749 | FJ860633 | FJ860533 | KJ664993 | – |
T. epimyces | Green/harzianum | C.P.K. 1980 | Germany | EU518662 | EU498319 | EU498359 | KJ664993 | – |
T. guizhouense | Green/harzianum | HGUP0039 | China | – | JX089585 | – | – | – |
T. harzianum | Green/harzianum | CBS 226.95 (T neo) | UK: England | AY605713 | AF534621 | AF545549 | – | – |
T1 | China | KX632476 | KX632533 | KX632590 | KX632647 | KX632704 | ||
T2 | China | KX632477 | KX632534 | KX632591 | KX632648 | KX632705 | ||
T3 | China | KX632478 | KX632535 | KX632592 | KX632649 | KX632706 | ||
T4 | China | KX632479 | KX632536 | KX632593 | KX632650 | KX632707 | ||
T5 | China | KX632480 | KX632537 | KX632594 | KX632651 | KX632708 | ||
T6 | China | KX632481 | KX632538 | KX632595 | KX632652 | KX632709 | ||
T7 | China | KX632482 | KX632539 | KX632596 | KX632653 | KX632710 | ||
T8 | China | KX632483 | KX632540 | KX632597 | KX632654 | KX632711 | ||
T9 | China | KX632484 | KX632541 | KX632598 | KX632655 | KX632712 | ||
T10 | China | KX632485 | KX632542 | KX632599 | KX632656 | KX632713 | ||
T11 | China | KX632486 | KX632543 | KX632600 | KX632657 | KX632714 | ||
T12 | China | KX632487 | KX632544 | KX632601 | KX632658 | KX632715 | ||
T13 | China | KX632488 | KX632545 | KX632602 | KX632659 | KX632716 | ||
T14 | China | KX632489 | KX632546 | KX632603 | KX632660 | KX632717 | ||
T15 | China | KX632490 | KX632547 | KX632604 | KX632661 | KX632718 | ||
T17 | China | KX632491 | KX632548 | KX632605 | KX632662 | KX632719 | ||
T18 | China | KX632492 | KX632549 | KX632606 | KX632663 | KX632720 | ||
T19 | China | KX632493 | KX632550 | KX632607 | KX632664 | KX632721 | ||
T21 | China | KX632494 | KX632551 | KX632608 | KX632665 | KX632722 | ||
T22 | China | KX632495 | KX632552 | KX632609 | KX632666 | KX632723 | ||
T23 | China | KX632496 | KX632553 | KX632610 | KX632667 | KX632724 | ||
T26 | China | KX632497 | KX632554 | KX632611 | KX632668 | KX632725 | ||
T29 | China | KX632498 | KX632555 | KX632612 | KX632669 | KX632726 | ||
T30 | China | KX632499 | KX632556 | KX632613 | KX632670 | KX632727 | ||
T31 | China | KX632500 | KX632557 | KX632614 | KX632671 | KX632728 | ||
T32 | China | KX632501 | KX632558 | KX632615 | KX632672 | KX632729 | ||
T33 | China | KX632502 | KX632559 | KX632616 | KX632673 | KX632730 | ||
T34 | China | KX632503 | KX632560 | KX632617 | KX632674 | KX632731 | ||
T35 | China | KX632504 | KX632561 | KX632618 | KX632675 | KX632732 | ||
T37 | China | KX632505 | KX632562 | KX632619 | KX632676 | KX632733 | ||
T38 | China | KX632506 | KX632563 | KX632620 | KX632677 | KX632734 | ||
T45 | China | KX632507 | KX632564 | KX632621 | KX632678 | KX632735 | ||
T46 | China | KX632508 | KX632565 | KX632622 | KX632679 | KX632736 | ||
T47 | China | KX632509 | KX632566 | KX632623 | KX632680 | KX632737 | ||
T49 | China | KX632510 | KX632567 | KX632624 | KX632681 | KX632738 | ||
T55 | China | KX632511 | KX632568 | KX632625 | KX632682 | KX632739 | ||
T56 | China | KX632512 | KX632569 | KX632626 | KX632683 | KX632740 | ||
T. hausknechtii | Green/harzianum | Hypo 649 = CBS 133493 (T) | France | – | KJ665515 | KJ665276 | KJ665034 | – |
T. helicolixii | Green/harzianum | S640 = CBS 133499 (T) | Greece | – | KJ665517 | KJ665278 | KJ665036 | – |
T. inhamatum | Green/harzianum | CBS 273.78 (T) | Colombia | – | AF348099 | FJ442725 | – | – |
T. italicum | Green/harzianum | S131 = CBS 132567 (T) | Italy | – | KJ665525 | KJ665282 | KJ665045 | – |
T. longibrachiatum | Longibrachiatum | CBS 816.68 | USA | – | EU401591 | DQ087242 | – | – |
S328 | Spain | – | JQ685867 | JQ685883 | – | – | ||
T. parepimyces | Green/harzianum | CBS 122769 (T) | Austria | – | FJ860664 | FJ860562 | KJ665138 | – |
T. pleuroti | Green/harzianum | CBS 124387 (T) | Korea | – | HM142382 | HM142372 | – | – |
T. pleuroticola | Green/harzianum | CBS 124383 (T) | Korea | – | HM142381 | HM142371 | – | – |
T. polysporum | Polysporum | Hypo 422 = C.P.K. 2461 | Austria | – | – | FJ179613 | KJ665057 | – |
Hypo 522 = C.P.K. 3131 | Austria | – | FJ860661 | JQ685878 | KJ665138 | – | ||
T50 | China | KX632525 | KX632582 | KX632639 | KX632696 | KX632753 | ||
T. priscilae | Green/harzianum | S168 = CBS 131487 (T) | Spain | – | KJ665691 | KJ665333 | KJ665151 | – |
T. pseudogelatinsum | Green/harzianum | CNU N309 | Korea | – | HM920202 | HM920173 | – | – |
T. pyramidale | Green/harzianum | S73 = CBS 135574 (T) | Italy | – | KJ665699 | KJ665334 | KJ665116 | – |
S573 | Italy | – | KJ665698 | – | – | – | ||
S533 | Spain | – | KJ665697 | – | KJ665162 | – | ||
T20 | China | KX632513 | KX632570 | KX632627 | KX632684 | KX632741 | ||
T. reesei | Longibrachiatum | QM 6a = CBS 383.78 (T) | New Guinea | – | – | HM182969 | KJ665163 | – |
T. rossicum | Stromaticum | DAOM 230011 (T) | Russia | – | AY937441 | HQ342288 | – | – |
T27 | China | KX632526 | KX632583 | KX632640 | KX632697 | KX632754 | ||
T51 | China | KX632527 | KX632584 | KX632641 | KX632698 | KX632755 | ||
T52 | China | KX632528 | KX632585 | KX632642 | KX632699 | KX632756 | ||
T. saturnisporopsis | Longibrachiatum | TR 175 = C.P.K. 1356 (T) | USA | – | – | DQ857348 | – | – |
T. saturnisporum | Longibrachiatum | ATCC 18903 = CBS 330.70 | USA | – | EU280044 | DQ087243 | – | – |
T. simmonsii | Green/harzianum | Hypo 15 = C.P.K. 1596 | Austria | – | KJ665706 | – | – | – |
Hypo 30 = C.P.K. 2391 | Austria | – | KJ665707 | – | KJ665182 | – | ||
S7 | Italy | – | KJ665719 | KJ665337 | KJ665182 | – | ||
T. stramineum | Green/harzianum | G.J.S.02-84 = CBS 114248 | Sri Lanka | AY737765 | AY391999 | AY391945 | – | – |
T. stromaticum | Stromaticum | P.C. 209 | Brazil | – | AF534613 | AF545539 | KJ665185 | – |
T. tawa | Green/harzianum | G.J.S. 97-174 | Thailand | AY737756 | AY392004 | AY391956 | – | – |
T. tomentosum | Green/harzianum | CBS 120637 | Austria | FJ860744 | FJ860629 | FJ860532 | KJ665222 | – |
DAOM 178713a (T) | Canada | – | AF534630 | AF545557 | – | – | ||
T. zoigense | Longibrachiatum | T25 | China | KX632529 | KX632586 | KX632643 | KX632700 | KX632757 |
T43 | China | KX632530 | KX632587 | KX632644 | KX632701 | KX632758 | ||
T44 (CGMCC 3.20145) | China | KX632531 | KX632588 | KX632645 | KX632702 | KX632759 | ||
T48 (CGMCC 3.20146) | China | KX632532 | KX632589 | KX632646 | KX632703 | KX632760 | ||
Protocrea farinosa | Outgroup | CBS 121551 | Austria | – | – | EU703935 | – | – |
C.P.K. 2472 | Austria | – | EU703892 | – | – | – | ||
P. pallida | Outgroup | CBS 121552 | Denmark | – | – | EU703944 | – | – |
CBS 299.78 (T) | USA | – | EU703900 | – | – | – |
