Table 2 Browsing ant mitochondrial genome assembly quality statistics.
From: Whole mitochondrial genomes reveal the relatedness of the browsing ant incursions in Australia
Assembly | # Contigs | Largest contig (bp) | Total length (bp) | Reference length (bp) | GC (%) | Reference GC (%) | N50 | NG50 | L50 | LG50 | # Total reads | Reference mapped (%) | Reference avg. coverage depth |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
B1_5 | 1 | 17,090 | 17,090 | 17,090 | 18.89 | 18.88 | 17,090 | 17,090 | 1 | 1 | 586,614 | 0.23 | 25 |
B2_4 | 1 | 17,430 | 17,430 | 17,090 | 18.82 | 18.88 | 17,430 | 17,430 | 1 | 1 | 5785 | 1.09 | 8.1 |
B2_5 | 1 | 17,106 | 17,106 | 17,090 | 18.87 | 18.88 | 17,106 | 17,106 | 1 | 1 | 2,173,702 | 0.38 | 287 |
Br1_2 | 1 | 17,149 | 17,149 | 17,090 | 18.72 | 18.88 | 17,149 | 17,149 | 1 | 1 | 572,617 | 0.38 | 79 |
Br1_4 | 1 | 17,090 | 17,090 | 17,090 | 18.84 | 18.88 | 17,090 | 17,090 | 1 | 1 | 11,995 | 0.8 | 104.9 |
Br1_7 | 1 | 17,114 | 17,114 | 17,090 | 18.78 | 18.88 | 17,114 | 17,114 | 1 | 1 | 749,198 | 0.51 | 150 |
Br2_1 | 1 | 17,090 | 17,090 | 17,090 | 18.85 | 18.88 | 17,090 | 17,090 | 1 | 1 | 2,065,859 | 0.66 | 258 |
Br2_4 | 1 | 17,120 | 17,120 | 17,090 | 18.85 | 18.88 | 17,120 | 17,120 | 1 | 1 | 2,187,723 | 0.04 | 36 |
Bw1_1 | 1 | 17,112 | 17,112 | 17,090 | 18.87 | 18.88 | 17,112 | 17,112 | 1 | 1 | 2,838,882 | 0.5 | 839 |
Bw1_2 | 1 | 17,346 | 17,346 | 17,090 | 18.87 | 18.88 | 17,346 | 17,346 | 1 | 1 | 1,760,306 | 0.46 | 549 |
Bw2_1 | 1 | 17,164 | 17,164 | 17,090 | 18.87 | 18.88 | 17,164 | 17,164 | 1 | 1 | 1,238,919 | 0.63 | 490 |
BW2_2 | 1 | 17,117 | 17,117 | 17,090 | 18.86 | 18.88 | 17,117 | 17,117 | 1 | 1 | 637,361 | 0.67 | 287 |
I1_3 | 1 | 17,339 | 17,339 | 17,090 | 18.64 | 18.88 | 17,339 | 17,339 | 1 | 1 | 198,030 | 1.27 | 46 |
Md1_1 | 1 | 16,752 | 16,752 | 17,090 | 19.23 | 18.88 | 16,752 | 16,752 | 1 | 1 | 524,897 | 0.21 | 44 |
NF1_1 | 1 | 17,090 | 17,090 | 17,090 | 18.86 | 18.88 | 17,090 | 17,090 | 1 | 1 | 5,807,728 | 0.57 | 1152 |
NF1_2 | 1 | 17,222 | 17,222 | 17,090 | 18.75 | 18.88 | 17,222 | 17,222 | 1 | 1 | 5,879,940 | 0.41 | 1556 |
NF1_3 | 1 | 17,156 | 17,156 | 17,090 | 18.76 | 18.88 | 17,156 | 17,156 | 1 | 1 | 2,435,285 | 0.6 | 922 |
NT1_1 | 1 | 17,090 | 17,090 | 17,090 | 18.87 | 18.88 | 17,090 | 17,090 | 1 | 1 | 378,304 | 0.52 | 32 |
NT1_2 | 1 | 17,126 | 17,126 | 17,090 | 18.81 | 18.88 | 17,126 | 17,126 | 1 | 1 | 483,902 | 0.5 | 64 |
O1_2 | 1 | 17,222 | 17,222 | 17,090 | 18.8 | 18.88 | 17,222 | 17,222 | 1 | 1 | 8895 | 1.09 | 44.5 |
O1_3 | 1 | 17,090 | 17,090 | 17,090 | 18.85 | 18.88 | 17,090 | 17,090 | 1 | 1 | 227,255 | 0.56 | 28 |
PA1_6 | 1 | 17,116 | 17,116 | 17,090 | 18.85 | 18.88 | 17,116 | 17,116 | 1 | 1 | 403,286 | 0.49 | 27 |
PA1_9 | 1 | 17,098 | 17,098 | 17,090 | 18.69 | 18.88 | 17,098 | 17,098 | 1 | 1 | 275,552 | 0.8 | 33 |
PA2_3 | 1 | 17,386 | 17,386 | 17,090 | 18.81 | 18.88 | 17,386 | 17,386 | 1 | 1 | 48,954 | 2.27 | 35.3 |
PA2_5 | 1 | 17,090 | 17,090 | 17,090 | 18.89 | 18.88 | 17,090 | 17,090 | 1 | 1 | 2,214,177 | 0.66 | 405 |
Rk1_1 | 1 | 17,112 | 17,112 | 17,090 | 18.86 | 18.88 | 17,112 | 17,112 | 1 | 1 | 1,263,275 | 0.7 | 315 |
Rk1_2 | 1 | 17,113 | 17,113 | 17,090 | 18.87 | 18.88 | 17,113 | 17,113 | 1 | 1 | 7,494,115 | 0.47 | 1785 |
SI_H | 1 | 17,129 | 17,129 | 17,090 | 18.79 | 18.88 | 17,129 | 17,129 | 1 | 1 | 2,375,332 | 0.32 | 195 |
T1_1 | 1 | 17,112 | 17,112 | 17,090 | 18.87 | 18.88 | 17,112 | 17,112 | 1 | 1 | 989,144 | 0.66 | 180 |
T1_2 | 1 | 17,144 | 17,144 | 17,090 | 18.88 | 18.88 | 17,144 | 17,144 | 1 | 1 | 135,821 | 0.48 | 10 |
T1_3 | 1 | 17,129 | 17,129 | 17,090 | 18.85 | 18.88 | 17,129 | 17,129 | 1 | 1 | 1,712,134 | 0.62 | 466 |
T2_3 | 1 | 17,274 | 17,274 | 17,090 | 18.83 | 18.88 | 17,274 | 17,274 | 1 | 1 | 46,526 | 0.52 | 9.2 |
TL1 | 1 | 17,090 | 17,090 | 17,090 | 18.85 | 18.88 | 17,090 | 17,090 | 1 | 1 | 240,608 | 1.97 | 165 |
TL2 | 1 | 17,111 | 17,111 | 17,090 | 18.75 | 18.88 | 17,111 | 17,111 | 1 | 1 | 20,329 | 1.08 | 10 |
W1_1 | 1 | 17,116 | 17,116 | 17,090 | 18.87 | 18.88 | 17,116 | 17,116 | 1 | 1 | 1,223,499 | 0.58 | 371 |
W1_2_3 | 1 | 17,223 | 17,223 | 17,090 | 18.86 | 18.88 | 17,223 | 17,223 | 1 | 1 | 1,671,185 | 0.25 | 191 |
W1_2p_1 | 1 | 17,132 | 17,132 | 17,090 | 18.7 | 18.88 | 17,132 | 17,132 | 1 | 1 | 28,906 | 0.15 | 18.2 |
W1_2p_2 | 1 | 17,107 | 17,107 | 17,090 | 18.86 | 18.88 | 17,107 | 17,107 | 1 | 1 | 3,746,307 | 0.31 | 175 |
W1_2p_3 | 1 | 17,111 | 17,111 | 17,090 | 18.84 | 18.88 | 17,111 | 17,111 | 1 | 1 | 27,075 | 0.97 | 87.9 |
W1_2p_5 | 1 | 17,181 | 17,181 | 17,090 | 18.79 | 18.88 | 17,181 | 17,181 | 1 | 1 | 15,819 | 0.53 | 40 |
W1_2p_6 | 1 | 17,116 | 17,116 | 17,090 | 18.86 | 18.88 | 17,116 | 17,116 | 1 | 1 | 1,196,825 | 0.44 | 85 |
W2_1 | 1 | 17,105 | 17,105 | 17,090 | 18.87 | 18.88 | 17,105 | 17,105 | 1 | 1 | 251,384 | 2.37 | 186 |
W2_2 | 1 | 17,106 | 17,106 | 17,090 | 18.86 | 18.88 | 17,106 | 17,106 | 1 | 1 | 142,607 | 1.1 | 47 |
W3_1 | 1 | 16,478 | 16,478 | 17,090 | 19.07 | 18.88 | 16,478 | 16,478 | 1 | 1 | 2,059,926 | 0.56 | 840 |
W3_2 | 1 | 16,455 | 16,455 | 17,090 | 19.19 | 18.88 | 16,455 | 16,455 | 1 | 1 | 3,846,684 | 0.48 | 1261 |
W4_1 | 1 | 17,111 | 17,111 | 17,090 | 18.87 | 18.88 | 17,111 | 17,111 | 1 | 1 | 855,920 | 0.41 | 166 |
W4_2 | 1 | 17,107 | 17,107 | 17,090 | 18.88 | 18.88 | 17,107 | 17,107 | 1 | 1 | 1,856,809 | 0.3 | 307 |
W4_3 | 1 | 17,284 | 17,284 | 17,090 | 18.86 | 18.88 | 17,284 | 17,284 | 1 | 1 | 989,304 | 0.52 | 268 |
W5_1 | 1 | 17,115 | 17,115 | 17,090 | 18.86 | 18.88 | 17,115 | 17,115 | 1 | 1 | 370,556 | 4.26 | 424 |
W5_2 | 1 | 17,116 | 17,116 | 17,090 | 18.85 | 18.88 | 17,116 | 17,116 | 1 | 1 | 61,510 | 4.57 | 66 |
W5_3 | 1 | 17,111 | 17,111 | 17,090 | 18.86 | 18.88 | 17,111 | 17,111 | 1 | 1 | 1,597,430 | 0.88 | 447 |
Minimum | 1 | 16,455 | 16,455 | 17,090 | 18.64 | 18.88 | 16,455 | 16,455 | 1 | 1 | 5785 | 0.04 | 8 |
Maximum | 1 | 17,430 | 17,430 | 17,090 | 19.23 | 18.88 | 17,430 | 17,430 | 1 | 1 | 7,494,115 | 4.57 | 1785 |
Average | 1 | 17,116 | 17,116 | 17,090 | 18.85 | 18.88 | 17,116 | 17,116 | 1 | 1 | 1,332,043 | 0.82 | 306 |
Median | 1 | 17,114 | 17,114 | 17,090 | 18.86 | 18.88 | 17,114 | 17,114 | 1 | 1 | 749,198 | 0.56 | 166 |