Table 3 Antigenic characteristics and MLST of SN-F E. coli strains retrieved from water, fish, and humans.
Sample type | Source | Antigenic characteristics | MLST Pasteur ST | MLST Whittam ST | MLST PubMLST (Achtman) ST | Number of Isolates with the Same Antigen |
|---|---|---|---|---|---|---|
Water | Lake Babogaya | O116: H49 | publicST325 | ST2001 | publicST2520 | 1 |
Lake Hora Arsedi | O20: H8 | ST2121 | ST611 | publicST164 | 1 | |
Lake Hora Arsedi | O174: H43 | ST2119 | ST2001 | publicST2244 | 1 | |
Lake Koftu | O116: H49 | publicST325 | ST2001 | publicST2520 | 1 | |
Lake Koftu | O8: H10 | publicST86 | ST2608 | N/A | 1 | |
Lake Koka | O17/O44: H18 | ST2118 | ST2607 | publicST69 | 1 | |
Lake Dambel | O17/O44: H18 | ST2118 | ST2607 | publicST69 | 1 | |
Fish skin swab | Lake Koftu | O176: H11 | ST2120 | ST1634 | publicST48 | 2 |
Fish Meat | Lake Koka | O176: H11 | ST2120 | ST1634 | publicST48 | 1 |
Lake Koka | O155: H21 | publicST87 | ST301 | publicST58 | 1 | |
Lake Koka | O10: H5 | ST785 | ST2605 | publicST206 | 1 | |
Lake Babogaya | O18ac: H21 | ST2123 | ST2611 | publicST223 | 1 | |
Fish Feces | Lake Koka | O-Unknown: H28 | ST2122 | ST2609 | publicST1633 | 1 |
Human stool | Koka Health Center | O168: H2 | ST2117 | ST2606 | N/A | 2 |
Koka Health Center | O8: H25 | publicST24 | ST294 | publicST58 | 1 | |
Bishoftu Hospital | O-Unknown: H40 | publicST2 | ST2610 | publicST10 | 1 | |
Bishoftu Hospital | O155: H10 | publicST21 | ST284 | publicST1049 | 1 | |
Batu Health Center | O155: H10 | publicST21 | ST284 | publicST1049 | 4 |
