Table 1 The genes analysed.

From: Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics

Gene

Product

Chr

CDS Len

Resistance gene

Unique missence SNPs

Unique synonymous SNP

XM_021851049.1

TATAmodulator

NC_035107.1

3178

 

557

1040

XM_001648700.2

Ydcl

NC_035107.1

2902

 

380

602

XM_021851750.1

LOC110678629

NC_035107.1

1095

 

35

13

XM_021857384.1

LOC5580295

NC_035107.1

2479

 

657

437

XM_001652683.2

PotassiumChannel

NC_035107.1

1017

 

39

262

XM_021840622.1

GABA

NC_035108.1

1653

Yes

64

180

XM_021841341.1

AngiogenicFactor

NC_035108.1

1811

 

334

439

XM_001664194.2

TIFIID2

NC_035108.1

3755

 

217

738

XM_001662595.2

Mcm6

NC_035108.1

2429

 

99

167

XM_001657120.2

Cytochromeb-c1

NC_035108.1

797

 

48

122

XM_021846286.1

GSTE2

NC_035108.1

666

Yes

109

158

XM_021847043.1

Carbohydratesulfotransferase

NC_035108.1

1330

 

194

291

XM_001657462.3

LOC5567548

NC_035109.1

1745

 

334

396

XM_021850261.1

ZincFinger

NC_035109.1

1497

 

235

267

XM_021851332.1

ACE1

NC_035109.1

2102

Yes

99

144

XM_001649087.2

grpE

NC_035109.1

676

 

63

59

XM_001649790.2

LOC5565494

NC_035109.1

2445

 

527

535

XM_021852340.1

VGSC

NC_035109.1

6379

Yes

202

873

XM_021853012.1

LOC5579101

NC_035109.1

1836

 

378

208

YP_009389261.1

COX1

NC_035159.1

1536

 

1230*

0*

  1. *The annotation in GCF_002204515.2 assembly has missing start codon for mitochondrial cox1 and as a result snpEff did not distinguish between synonymous and non-synonymous SNPs. CDS = coding sequence.
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