Table 3 Gene annotation through in-silico analysis to identify candidate genes.

Phi2

QCALS.iari-1BL_Phi2

TraesCS1B02G343300

1B:571444691–571445480

Photosystem II reaction center W protein, chloroplastic

QCALS.iari-2DL_Phi2

TraesCS2D02G599200

2D:650684790–650686459

Cytochrome P450 89A9

NPQ

QCTTS.iari-5AL_NPQ

TraesCS5A02G314800

5A:525115605–525117944

UDP-glucose 4-epimerase 3

TraesCS5A02G314700

5A:525077777–525079517

Heat stress transcription factor B-2c

TraesCS5A02G314600

5A:525025721–525026755

Ethylene-responsive transcription factor ERF071

QCTLS.iari-4BS_NPQ

TraesCS4B02G116200

4B:133851917–133854945

UDP-glucose 6-dehydrogenase 4

QCTTS.iari-3DS_NPQ

TraesCS3D02G165300

3D:137002179–137006358

25.3 kDa vesicle transport protein

RC

QCTTS.iari-5AL_RC

TraesCS5A02G444500

5A:624706560–624708402

UDP-glycosyltransferase 73E1

QCTTS.iari-5BL_RC

TraesCS5B02G368900

5B:547652774–547657481

Chaperonin 60 subunit alpha 2, chloroplastic

QCTTS.iari-6BL_RC

TraesCS6B02G363300

6B:634501638–634502222

Putative ripening-related protein 5

QCTTS.iari-1DL_RC

TraesCS1D02G355200

1D:439878998–439883243

Hexokinase-2

TraesCS1D02G354100

1D:439414111–439415360

Peroxidase 1

QCTTS.iari-6DS_RC

TraesCS6D02G042400

6D:17309364–17310623

Putative wall-associated receptor kinase-like 16

TraesCS6D02G042300

6D:17297853–17304530

Wall-associated receptor kinase 2

CTD

QCTTS.iari-2BS_CTD

TraesCS2B02G111000

2B:72811061–72817327

Probable glutamyl endopeptidase, chloroplastic

TraesCS2B02G110800

2B:72608545–72619945

Lon protease homolog

PS1

QCATS.iari-2DL_PS1

TraesCS2D02G404800

2D:519132647–519135038

Aquaporin PIP1-2

TraesCS2D02G404600

2D:518969013–518971345

Cytochrome P450 86A22

TraesCS2D02G404500

2D:518810879–518814738

Thioredoxin-like 3–3

LT

QCALS.iari-4AL_LT

TraesCS4A02G192300

4A:472917832–472921560

Cyclin-dependent kinase B1-1

LA

QCATS.iari-1BS_LA

TraesCS1B02G004100

1B:2354630–2357674

Wall-associated receptor kinase 1

DTH

QCATS.iari-3AL_DTH

TraesCS3A02G422600

3A:663574417–663576507

Glycine-rich RNA-binding protein 4, mitochondrial

TraesCS3A02G421400

3A:662931519–662933524

Transcription factor bHLH49

TraesCS3A02G421900

3A:663258012–663265132

26S proteasome regulatory subunit 6A homolog A

QCTTS.iari-2BS_DTH

TraesCS2B02G015500

2B:7428456–7443833

Histone-lysine N-methyltransferase ASHH2

QCTTS.iari-4BLa_DTH

TraesCS4B02G374400

4B:658211040–658212993

GATA transcription factor 2

TraesCS4B02G373700

4B:657991716–657993829

VAN3-binding protein

TraesCS4B02G373600

4B:657989337–657991890

Formyltetrahydrofolate deformylase 2, mitochondrial

QCTTS.iari-4BLb_DTH

TraesCS4B02G398900

4B:673112846–673115678

Serine / arginine-rich splicing factor RS31

QCTTS.iari-6BL_DTH

TraesCS6B02G402700

6B:678744926–678745984

BTB / POZ and MATH domain-containing protein 1

QCTTS.iari-6BS_DTH

TraesCS6B02G110200

6B:92523435–92524395

18.9 kDa heat shock protein

TraesCS6B02G110400

6B:92697243–92698587

Probable xyloglucan endotransglucosylase/ hydrolase protein 30

TraesCS6B02G110600

6B:92749833–92755866

Ribose-phosphate pyrophosphokinase 1, chloroplastic

QCTTS.iari-7BL_DTH

TraesCS7B02G327700

7B:581892922–581894632

Probable xyloglucan endotransglucosylase/ hydrolase protein 23

TraesCS7B02G327600

7B:581794516–581796383

Inositol polyphosphate multikinase IPK2

TraesCS7B02G327400

7B:581372974–581376095

Xyloglucan endotransglucosylase/ hydrolase protein 22

QCATS.iari-1BL_DTH

TraesCS1B02G246600

1B:436536923–436537890

Protein SRC2

QCTLS.iari-1DL_DTH

TraesCS1D02G218700

1D:305586356–305590935

RNA-binding KH domain-containing protein PEPPER

DTM

QCTTS.iari-1AL_DTM

TraesCS1A02G433400

1A:584676043–584676930

Pentatricopeptide repeat-containing protein At2g15690, mitochondrial

QCATS.iari-3AL_DTM

TraesCS3A02G219300

3A:402135204–402136682

Protein tesmin / TSO1-like CXC 4

QCALS.iari-6BS_DTM

TraesCS6B02G028300

6B:16996335–16996970

MADS-box transcription factor PHERES 2

QCTTS.iari-1DL_DTM

TraesCS1D02G066600

1D:48021551–48024273

Importin subunit beta-1

TraesCS1D02G066400

1D:47934766–47936019

Polygalacturonase QRT2

QCTTS.iari-1DS_DTM

TraesCS1D02G136400

1D:181626866–181639553

Serine / threonine-protein kinase EDR1

QCATS.iari-2DS_DTM

TraesCS2D02G031400

2D:12619687–12623828

Transcription factor E2FB

TraesCS2D02G030800

2D:12550664–12552270

7-deoxyloganetin glucosyltransferase

PH

QCTTS.iari-2AS_PH

TraesCS2A02G041300

2A:16719074–16727514

Fatty acid amide hydrolase

TraesCS2A02G041500

2A:16745853–16746524

Ethylene-responsive transcription factor 1B

QCTTS.iari-5AL_PH

TraesCS5A02G548300

5A:702459427–702460136

PLASMODESMATA CALLOSE-BINDING PROTEIN 3

TraesCS5A02G548500

5A:702501770–702503426

Probable xyloglucan endotransglucosylase/ hydrolase protein 32

TraesCS5A02G548700

5A:702631484–702632670

Heat stress transcription factor C-2a

TraesCS5A02G549400

5A:703181022–703183341

UDP-glycosyltransferase 85A1

QCATS.iari-2DL_PH

TraesCS2D02G560400

2D:633258611–633259105

SKP1-like protein 1A

TC

QCTTS.iari-5AL_TC

TraesCS5A02G386600

5A:584415361–584420062

YTH domain-containing protein ECT2

QCTTS.iari-5BL_TC

TraesCS5B02G252600

5B:435597303–435598318

Probable E3 ubiquitin-protein ligase XERICO

TraesCS5B02G252500

5B:435156029–435159077

Serine / threonine-protein kinase D6PKL2

QCATS.iari-1DS_TC

TraesCS1D02G016800

1D:7583590–7587977

Wall-associated receptor kinase 2

SL

QCTLS.iari-2AS_SL

TraesCS2A02G212200

2A:197088104–197089901

Transcription factor UDT1

QCTTS.iari-6BL_SL,SPS

TraesCS6B02G360300

6B:632182793–632188473

Soluble inorganic pyrophosphatase 6, chloroplastic

TraesCS6B02G360500

6B:632304665–632305774

WAT1-related protein At2g39510

SPS

QCTTS.iari-6BL_SPS

TraesCS6B02G360300

6B:632182793–632188473

Soluble inorganic pyrophosphatase 6, chloroplastic

TraesCS6B02G360500

6B:632304665–632305774

WAT1-related protein At2g39510

GPS

QCTLS.iari-3BL_GPS

TraesCS3B02G303600

3B:487855328–487857841

Aldehyde oxidase GLOX1

TraesCS3B02G304300

3B:488542649–488550339

Protein MALE DISCOVERER 1

TraesCS3B02G304200

3B:488535427–488537668

Rop guanine nucleotide exchange factor 11

TGW

QCTTS.iari-3DS_TGW

TraesCS3D02G148000

3D:112694083–112698708

Sodium/calcium exchanger NCL1

TraesCS3D02G148200

3D:112960872–112963125

Basic leucine zipper 2

QCALS.iari-6DL_TGW

TraesCS6D02G362000

6D:452735812–452739910

SAP-like protein BP-73

GY

QCTTS.iari-5AL_GY

TraesCS5A02G500700

5A:666682422–666683774

NAC domain-containing protein 22

QCTTS.iari-3BS_GY

TraesCS3B02G052900

3B:26751728–26753832

Beta-1,2-xylosyltransferease XAX1

QCTTS.iari-7DL_GY

TraesCS7D02G516500

7D:616035255–616041322

Protein PSK SIMULATOR 1

TraesCS7D02G515100

7D:615774804–615776009

Transcription factor MYB44

GL

QCALS.iari-3AL_GL

TraesCS3A02G408200

3A:653303151–653306203

Bidirectional sugar transporter SWEET1a

TraesCS3A02G408000

3A:653240579–653244186

Scarecrow-like protein 1

GB

QCTTS.iari-5BL_GB

TraesCS5B02G241900

5B:421645424–421646515

Oil body-associated protein 1A

QCALS.iari-7DL_GB,GSA

TraesCS7D02G523600

7D:620116105–620117371

Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3

GSA

QCALS.iari-1BL_GSA

TraesCS1B02G200300

1B:359198865–359209340

Tubulin-folding cofactor D