Table 6 Comparison of the prediction results for different PSSM-based feature description methods on Dataset3 (\(\%\)).
From: Hybrid framework for membrane protein type prediction based on the PSSM
Specific type | Index | Dpc-PSSM | Eedp-PSSM | DF-PSSM | Kse-PSSM | Ab-PSSM | Rpm-PSSM | TG-PSSM | ICNN |
|---|---|---|---|---|---|---|---|---|---|
Type I | Se | 86.10 | 86.55 | 71.30 | 88.34 | 84.30 | 78.92 | 87.00 | 90.58 |
Sp | 97.65 | 97.12 | 94.77 | 97.79 | 97.89 | 98.25 | 98.27 | 99.42 | |
ACC | 96.53 | 96.10 | 92.50 | 96.88 | 96.57 | 96.40 | 97.18 | 98.57 | |
Mcc | 80.91 | 79.12 | 60.93 | 82.91 | 80.76 | 78.96 | 84.10 | 91.68 | |
Type II | Se | 82.05 | 74.36 | 2.56 | 74.36 | 82.05 | 61.54 | 84.62 | 97.44 |
Sp | 97.53 | 97.57 | 99.51 | 97.84 | 97.49 | 99.21 | 98.72 | 98.41 | |
ACC | 97.27 | 97.18 | 97.88 | 97.44 | 97.22 | 98.57 | 98.48 | 98.40 | |
Mcc | 53.56 | 49.51 | 3.73 | 51.50 | 53.24 | 58.57 | 66.43 | 70.13 | |
Type III | Se | 33.33 | 33.33 | 0 | 16.67 | 50.00 | 16.67 | 33.33 | 50.00 |
Sp | 99.78 | 99.74 | 100 | 100 | 99.78 | 100 | 99.87 | 99.70 | |
ACC | 99.61 | 99.57 | 99.74 | 99.78 | 99.65 | 99.78 | 99.70 | 99.57 | |
Mcc | 30.67 | 28.65 | 0 | 40.78 | 43.13 | 40.78 | 36.36 | 38.53 | |
Type IV | Se | 70.00 | 80.00 | 0 | 50.00 | 70.00 | 40.00 | 80.00 | 90.00 |
Sp | 99.78 | 99.83 | 100 | 99.96 | 100 | 100 | 99.87 | 99.70 | |
ACC | 99.65 | 99.74 | 99.57 | 99.74 | 99.87 | 99.74 | 99.78 | 99.65 | |
Mcc | 63.73 | 72.90 | 0 | 64.44 | 83.61 | 63.16 | 76.17 | 71.00 | |
Mutipass | Se | 91.45 | 89.90 | 89.24 | 91.45 | 91.87 | 92.83 | 92.35 | 94.32 |
Sp | 96.52 | 96.68 | 79.46 | 95.73 | 95.42 | 83.57 | 97.79 | 96.84 | |
ACC | 92.84 | 91.76 | 86.56 | 92.63 | 92.84 | 90.29 | 93.84 | 95.01 | |
Mcc | 83.69 | 81.64 | 67.15 | 83.08 | 83.44 | 75.81 | 85.96 | 88.20 | |
Lipid-chain -anchored | Se | 42.31 | 19.23 | 3.85 | 15.38 | 30.77 | 11.54 | 30.77 | 53.85 |
Sp | 99.25 | 99.21 | 100 | 99.87 | 99.21 | 100 | 99.65 | 99.65 | |
ACC | 98.61 | 98.31 | 98.92 | 98.92 | 98.44 | 99.00 | 98.87 | 99.13 | |
Mcc | 40.07 | 19.59 | 19.50 | 29.27 | 29.98 | 33.80 | 38.69 | 58.10 | |
GPI-anchored | Se | 70.83 | 88.33 | 12.50 | 66.67 | 83.33 | 50.00 | 75.00 | 91.67 |
Sp | 99.43 | 99.21 | 99.91 | 99.52 | 99.04 | 99.56 | 99.61 | 99.61 | |
ACC | 99.13 | 99.05 | 99.00 | 99.18 | 98.87 | 99.05 | 99.35 | 99.52 | |
Mcc | 62.93 | 65.80 | 27.08 | 62.44 | 62.51 | 51.74 | 70.39 | 80.43 | |
Peripheral | Se | 82.30 | 82.30 | 65.25 | 85.25 | 79.67 | 79.67 | 88.20 | 89.51 |
Sp | 95.15 | 94.40 | 90.10 | 93.65 | 95.35 | 93.90 | 93.65 | 96.60 | |
ACC | 93.45 | 92.80 | 86.82 | 92.54 | 93.28 | 92.02 | 92.93 | 95.66 | |
Mcc | 73.30 | 71.35 | 49.67 | 71.52 | 72.04 | 68.29 | 73.52 | 82.18 | |
ALL | OA | 88.55 | 87.25 | 80.48 | 88.55 | 88.37 | 87.42 | 90.07 | 92.76 |
Dimension | 400-D | 400-D | 20-D | 400-D | 400-D | 400-D | 8000-D | – |
