Fig. 4
From: Carriage and antimicrobial susceptibility of commensal Neisseria species from the human oropharynx
AMR and virulence genes. Draft genomes were analysed for AMR genes (CARD, ResFinder and Megares databases) and virulence (VFDB) genes using Abricate (min ID/coverage 80%). Circles represent the presence of gene, scaled to %ID. Similar profiles were grouped using Euclidean hierarchical clustering using average linkage algorithm in Morpheus. Study isolates are given with MALDI-ToF identification in parenthesis. 1 to 5 indicate cgMLST clustering group; 1 = N. meningitidis/N. gonorrhoeae cluster, 2 = N. bacilliformis cluster, 3 = N. flavescens cluster, 4 = N. subflava cluster, 5 = N. macacae cluster.
