Table 1 Cell motility of upregulated genes expressed in the ΔcdsR mutant.

From: A novel regulator CdsR negatively regulates cell motility in Bacillus thuringiensis

Gene ID

Gene name

ΔcdsR FPKMa

HD73 FPKM

Log2fold-changeb

Operons

Orientationc

Annotations

HD73_RS09605

motA1

1934.6

1154.36

1.14

motAB1

+

Flagellar motor protein MotA1

HD73_RS09610

motB1

105.58

63.42

1.15

motAB1

+

Flagellar motor protein MotB1

HD73_RS09615

cheY

96.44

56.67

1.17

cheY-yrhK

+

Chemotaxis protein CheY

HD73_RS09620

cheA

791.5

458.4

1.18

cheY-yrhK

+

Chemotaxis protein CheA

HD73_RS09625

cheC

152.87

88.55

1.18

cheY-yrhK

+

Flagellar motor switch protein CheC

HD73_RS09630

ygaD

37.2

21.32

1.21

cheY-yrhK

+

Hypothetical protein

HD73_RS09635

yrhK

43.27

24.66

1.21

cheY-yrhK

+

Hypothetical protein

HD73_RS09640

cheR

170.43

96.24

1.23

lamB-cheR

-

Chemotaxis methyltransferase CheR

HD73_RS09645

lamB

105.02

56.36

1.3

lamB-cheR

-

Hypothetical protein

HD73_RS09650

yaaR

256.4

135.49

1.32

yaaR-fliG2

+

YaaR family protein

HD73_RS09655

flgN

193.65

101.12

1.34

yaaR-fliG2

+

Flagellar export chaperones FlgN

HD73_RS09660

flgK

3458.4

1801.12

1.34

yaaR-fliG2

+

Flagellar hook-associated protein FlgK

HD73_RS09665

flgL

193.15

99.56

1.35

yaaR-fliG2

+

Flagellar hook-associated protein FlgL

HD73_RS09670

fliD

119.18

61.13

1.36

yaaR-fliG2

+

Flagellar hook-associated protein 2

HD73_RS09675

fliS

142.13

72.26

1.38

yaaR-fliG2

+

Flagellar secretion chaperone FliS

HD73_RS09680

yopR

129.56

65.5

1.39

yaaR-fliG2

+

Hypothetical protein

HD73_RS09685

flgB

822.32

409.15

1.4

yaaR-fliG2

+

Flagellar basal-body rod protein FlgB

HD73_RS09690

flgC

320.46

158.72

1.42

yaaR-fliG2

+

Flagellar basal-body rod protein FlgC

HD73_RS09700

fliF

610.15

296.79

1.44

yaaR-fliG2

+

Flagellar M-ring protein FliF

HD73_RS09705

fliG1

124.99

53.36

1.63

yaaR-fliG2

+

Flagellar motor switch protein FliG1

HD73_RS09710

fliH

154.92

65.18

1.65

yaaR-fliG2

+

Flagellar assembly protein FliH

HD73_RS09715

fliI

408.35

168.23

1.68

yaaR-fliG2

+

Flagellar protein export ATPase FliI

HD73_RS09720

phoU

7923.49

3101.4

1.75

yaaR-fliG2

+

Cytoplasmic protein

HD73_RS09725

fliK

155.23

60.39

1.77

yaaR-fliG2

+

Flagellar hook-length control protein FliK

HD73_RS09730

flgD

245.96

84.9

1.94

yaaR-fliG2

+

Flagellar hook assembly protein FlgD

HD73_RS09735

flgE

329.04

113.26

1.94

yaaR-fliG2

+

Flagellar hook protein FlgE

HD73_RS09740

ykuH

179.5

61.9

1.94

yaaR-fliG2

+

Hypothetical protein

HD73_RS09745

fliG2

1109.88

363.8

2.01

yaaR-fliG2

+

Flagellar motor switch protein FliG

HD73_RS09750

cheV

774.38

252.27

2.02

cheV-mogR

+

Chemotaxis protein CheV

HD73_RS09770

yjbJ

141.81

45.29

2.04

yjbJ-flgG

+

Lysozyme-like protein

HD73_RS09775

fliN1

424.1

133.85

2.07

yjbJ-flgG

+

Flagellar motor switch protein FliN1

HD73_RS09780

fliM

293.42

75.49

2.36

yjbJ-flgG

+

Flagellar motor switch protein FliM

HD73_RS09785

fliN2

83.28

54.55

1.01

yjbJ-flgG

+

Flagellar motor switch protein FliN2

HD73_RS09790

fliN3

244.34

160.12

1.02

yjbJ-flgG

+

Flagellar motor switch protein FliN3

HD73_RS09795

fliP

672.6

436.78

1.02

yjbJ-flgG

+

Flagellar biosynthesis protein FliP

HD73_RS09800

fliQ

68.19

44.46

1.02

yjbJ-flgG

+

Flagellar biosynthesis protein FliQ

HD73_RS09805

fliR

161.98

105.12

1.04

yjbJ-flgG

+

Flagellar biosynthesis protein FliR

HD73_RS09820

flhF

334.11

213.68

1.04

yjbJ-flgG

+

Flagellar biosynthesis protein FlhF

HD73_RS09825

flgG

447.8

284.92

1.05

yjbJ-flgG

+

Flagellar basal-body rod protein FlgG

HD73_RS23925

motB2

653.98

354.54

1.27

motAB2

+

Flagellar motor protein MotB2

HD73_RS23930

motA2

1404.14

761.50

1.28

motAB2

+

Flagellar motor stator protein MotA2

  1. aThe differentially expressed genes associated with cell motility were analyzed according to fragments per kilobase of transcript per million mapped reads (FPKM). bDifferentially expressed genes were screened based on a log2fold-change ≥ 1 and a false discovery rate cutoff of P ≤ 0.05, using RNA-Seq data. cThe plus (+) and minus (-) signs represent the forward and reverse strands of the DNA sequence, respectively.
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