Table 10 Comparison of Predicted and Experimental ADMET properties of Palmatine and Berberine.

From: Computational drug discovery of phytochemical alkaloids targeting the NACHT/PYD domain in the NLRP3 inflammasome

Parameter

Palmatine Predicted Value

Palmatine Experimental Value

Palmatine Agreement

Berberine Predicted Value

Berberine Experimental Value

Berberine Agreement

GI Absorption

High

Low Bioavailability due to P-gp substrate

Moderate

High

Poor oral absorption and low bioavailability (Cmax = 0.411 µg/ml in rabbits after 50 mg/kg oral dose)

Moderate

BBB Permeant

Yes

No Data

n/a

Yes

Limited information on BBB permeation

Uncertain

P-gp Substrate

Yes

Palmatine is a P-gp substrate, no significant inhibition in Caco-2 cells

High

Yes

Berberine is a substrate for P-glycoprotein, contributing to low absorption in the intestine

High

P-gp Interaction (Caco-2)

No Data

No significant inhibition of P-gp (1-100 µM)

n/a

No Data

No Data

n/a

P-gp Interaction (LS 180)

No Data

Palmatine activated P-gp efflux and CYP3A4 function (10 µM)

n/a

No Data

No Data

n/a

CYP1A2 Inhibitor

No

Metabolized by CYP1A2

High

Yes

Increases CYP1A2 mRNA expression but is also metabolized by CYP1A2 (oxidative demethylation)

High

CYP2C19 Inhibitor

No

No Data

n/a

No

No Data

n/a

CYP2C9 Inhibitor

No

NP

n/a

No

No Data

n/a

CYP2D6 Inhibitor

Yes

Weak inhibition of CYP2D6 (IC50 = 92.6 µM)

High

Yes

Decreases CYP2D6 enzyme activity after oral administration

High

CYP3A4 Inhibitor

Yes

Palmatine activates CYP3A4 function

High

Yes

Decreases CYP3A4 enzyme activity in the liver

High

  1. *n/a- non-applicable fields.