Fig. 2 | Scientific Reports

Fig. 2

From: Exploring effector candidates in Rhynchosporium commune: insights into their expression dynamics during barley infection

Fig. 2

Heatmap illustrates the expression levels of ECs identified as DE_ECs through RNA-Seq data analysis. The heatmap displays scaled log2 fold-change values to manage the broad range of expression levels and highlight patterns, with red indicating positive values (upregulated genes) and blue indicating negative values (downregulated genes). Clustering of both rows and columns was performed based on correlation and average linkage methods to group similar expression profiles, facilitating a clearer visualization of trends and relationships within the data. CPDB refers to in vitro culture on Potato Dextrose Broth (PDB) medium, while CLBA indicates culture on Luria-Bertani Agar (LB) medium. 9 days post-inoculation (9 dpi) and 13 days post-inoculation (13 dpi) refer to samples collected from infected barley leaves.

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