Table 2 Classification of compounds from large-scale retention assay screen. Retention of 13,056 compounds was measured, and the classification was compared to the growth inhibiting effect of 12,823 compounds screened in whole-cell antibacterial screens. 49–50% of all compounds could be classified as either retention-positive (RP) or retention-negative (RN) compounds using a threshold value of 1% of retention. For 36% of all compounds there was no or low signal in the reference sample making further analysis impossible and the remaining 15% could not be unambiguously classified either as RP or RN. Yes = Growth inhibition of > 50% at 25 µM. NT = Not Tested.
Growth Inhibition | Experimental Retention classification | ||||
|---|---|---|---|---|---|
RP | RN | Ambiguous | Low/No Ref | ||
TolC mutant (Ec2350) | All | 2885 | 3531 | 1995 | 4645 |
Yes | 96 | 3 | 9 | 41 | |
No | 2751 | 3468 | 1965 | 4517 | |
NT | 38 | 60 | 21 | 87 | |
Wild type (Ec2122) | All | 1215 1) | 5301 | 1895 | 4645 |
Yes | 84 | 10 | 14 | 41 | |
No | 1115 | 5218 | 1851 | 4517 | |
NT | 16 | 73 | 30 | 87 | |