Table 2 Classification of compounds from large-scale retention assay screen. Retention of 13,056 compounds was measured, and the classification was compared to the growth inhibiting effect of 12,823 compounds screened in whole-cell antibacterial screens. 49–50% of all compounds could be classified as either retention-positive (RP) or retention-negative (RN) compounds using a threshold value of 1% of retention. For 36% of all compounds there was no or low signal in the reference sample making further analysis impossible and the remaining 15% could not be unambiguously classified either as RP or RN. Yes = Growth inhibition of > 50% at 25 µM. NT = Not Tested.

From: Measurement and prediction of small molecule retention by Gram-negative bacteria based on a large-scale LC/MS screen

 

Growth Inhibition

Experimental Retention classification

RP

RN

Ambiguous

Low/No Ref

TolC mutant (Ec2350)

All

2885

3531

1995

4645

Yes

96

3

9

41

No

2751

3468

1965

4517

NT

38

60

21

87

Wild type (Ec2122)

All

1215 1)

5301

1895

4645

Yes

84

10

14

41

No

1115

5218

1851

4517

NT

16

73

30

87

  1. 1) 26 compounds (0.9% of RP in Ec2350) were only found to be retention-positive in the wild-type strain but not in the TolC mutant.