Table 3 Characteristics of the polymorphic transcriptome-derived SSR markers used in genotyping of selected blueberry and cranberry DNA samples.

From: Generation and characterization of novel transcriptome-derived SSR markers for genetic applications in blueberry

Marker

Chr

Repeat motif

Na

PIC

Gene diversity**

I*

Vd_SSR_11666

1

(GA)21

4

0.22

0.36

0.54

Vc_SSR_06705

1

(AG)11

4

0.27

0.28

0.44

Vc_SSR_05524

2

(GA)22

9

0.25

0.25

0.41

Vc_SSR_04327

2

(GAA)19

3

0.16

0.19

0.33

Vc_SSR_02111

2

(TC)8

5

0.21

0.37

0.56

Vc_SSR_02719

3

(TC)8

4

0.29

0.26

0.40

Vd_SSR_00885

3

(GA)24

2

0.36

0.49

0.69

Vc_SSR_10297

3

c*

4

0.31

0.38

0.56

Vc_SSR_02210

4

(CT)22

3

0.26

0.40

0.59

Vc_SSR_12082

4

(AAG)15

3

0.27

0.36

0.52

Vc_SSR_05228

4

(CA)6

4

0.25

0.41

0.59

Vd_SSR_01750

5

(AG)13

2

0.22

0.48

0.67

Vc_SSR_01907

5

(TAC)16

8

0.23

0.24

0.39

Vc_SSR_04056

5

(GA)9

3

0.20

0.18

0.33

Vd_SSR_02071

6

c*

8

0.23

0.34

0.51

Vc_SSR_08332

6

(CT)15

3

0.17

0.31

0.48

Vc_SSR_11947

6

(GAA)6(AAAAG)5

4

0.21

0.37

0.53

Vd_SSR_01601

7

(GA)23

6

0.24

0.33

0.50

Vd_SSR_04609

7

c*

7

0.25

0.37

0.47

Vc_SSR_12358

7

(AGAAA)5

3

0.31

0.32

0.47

Vd_SSR_10879

8

(TTC)14

5

0.22

0.34

0.51

Vd_SSR_04972

8

(AG)24

4

0.15

0.37

0.53

Vd_SSR_10393

8

(TC)22

5

0.25

0.28

0.44

Vc_SSR_01896

9

(T)11gaactg(T)13

2

0.26

0.40

0.59

Vd_SSR_01952

9

c*

8

0.25

0.26

0.40

Vc_SSR_06298

9

(TC)8

6

0.24

0.26

0.40

Vc_SSR_03536

10

(CT)15

4

0.22

0.46

0.65

Vd_SSR_08786

10

(TC)23

8

0.25

0.28

0.43

Vc_SSR_00789

10

(GA)21

5

0.22

0.33

0.49

Vc_SSR_10853

11

(GA)8

3

0.23

0.36

0.54

Vc_SSR_01294

11

(A)12

2

0.23

0.36

0.54

Vc_SSR_07732

11

(TC)21

6

0.23

0.38

0.38

Vd_SSR_13458

12

(TG)8(AG)9 g(GA)7

7

0.22

0.31

0.48

Vd_SSR_06280

12

c*

4

0.23

0.40

0.58

Mean

  

158

0.24

0.34

0.50

Range

  

2–9

0.15–0.36

0.18–0.49

0.33–0.69

  1. c*, complex repeat motif
  2. **Average [Nei’s (1973) gene diversity]
  3. I*, Shannon’s Information index
  4. Na, number of alleles
  5. PIC polymorphism information content