Table 3 Characteristics of the polymorphic transcriptome-derived SSR markers used in genotyping of selected blueberry and cranberry DNA samples.
Marker | Chr | Repeat motif | Na | PIC | Gene diversity** | I* |
|---|---|---|---|---|---|---|
Vd_SSR_11666 | 1 | (GA)21 | 4 | 0.22 | 0.36 | 0.54 |
Vc_SSR_06705 | 1 | (AG)11 | 4 | 0.27 | 0.28 | 0.44 |
Vc_SSR_05524 | 2 | (GA)22 | 9 | 0.25 | 0.25 | 0.41 |
Vc_SSR_04327 | 2 | (GAA)19 | 3 | 0.16 | 0.19 | 0.33 |
Vc_SSR_02111 | 2 | (TC)8 | 5 | 0.21 | 0.37 | 0.56 |
Vc_SSR_02719 | 3 | (TC)8 | 4 | 0.29 | 0.26 | 0.40 |
Vd_SSR_00885 | 3 | (GA)24 | 2 | 0.36 | 0.49 | 0.69 |
Vc_SSR_10297 | 3 | c* | 4 | 0.31 | 0.38 | 0.56 |
Vc_SSR_02210 | 4 | (CT)22 | 3 | 0.26 | 0.40 | 0.59 |
Vc_SSR_12082 | 4 | (AAG)15 | 3 | 0.27 | 0.36 | 0.52 |
Vc_SSR_05228 | 4 | (CA)6 | 4 | 0.25 | 0.41 | 0.59 |
Vd_SSR_01750 | 5 | (AG)13 | 2 | 0.22 | 0.48 | 0.67 |
Vc_SSR_01907 | 5 | (TAC)16 | 8 | 0.23 | 0.24 | 0.39 |
Vc_SSR_04056 | 5 | (GA)9 | 3 | 0.20 | 0.18 | 0.33 |
Vd_SSR_02071 | 6 | c* | 8 | 0.23 | 0.34 | 0.51 |
Vc_SSR_08332 | 6 | (CT)15 | 3 | 0.17 | 0.31 | 0.48 |
Vc_SSR_11947 | 6 | (GAA)6(AAAAG)5 | 4 | 0.21 | 0.37 | 0.53 |
Vd_SSR_01601 | 7 | (GA)23 | 6 | 0.24 | 0.33 | 0.50 |
Vd_SSR_04609 | 7 | c* | 7 | 0.25 | 0.37 | 0.47 |
Vc_SSR_12358 | 7 | (AGAAA)5 | 3 | 0.31 | 0.32 | 0.47 |
Vd_SSR_10879 | 8 | (TTC)14 | 5 | 0.22 | 0.34 | 0.51 |
Vd_SSR_04972 | 8 | (AG)24 | 4 | 0.15 | 0.37 | 0.53 |
Vd_SSR_10393 | 8 | (TC)22 | 5 | 0.25 | 0.28 | 0.44 |
Vc_SSR_01896 | 9 | (T)11gaactg(T)13 | 2 | 0.26 | 0.40 | 0.59 |
Vd_SSR_01952 | 9 | c* | 8 | 0.25 | 0.26 | 0.40 |
Vc_SSR_06298 | 9 | (TC)8 | 6 | 0.24 | 0.26 | 0.40 |
Vc_SSR_03536 | 10 | (CT)15 | 4 | 0.22 | 0.46 | 0.65 |
Vd_SSR_08786 | 10 | (TC)23 | 8 | 0.25 | 0.28 | 0.43 |
Vc_SSR_00789 | 10 | (GA)21 | 5 | 0.22 | 0.33 | 0.49 |
Vc_SSR_10853 | 11 | (GA)8 | 3 | 0.23 | 0.36 | 0.54 |
Vc_SSR_01294 | 11 | (A)12 | 2 | 0.23 | 0.36 | 0.54 |
Vc_SSR_07732 | 11 | (TC)21 | 6 | 0.23 | 0.38 | 0.38 |
Vd_SSR_13458 | 12 | (TG)8(AG)9 g(GA)7 | 7 | 0.22 | 0.31 | 0.48 |
Vd_SSR_06280 | 12 | c* | 4 | 0.23 | 0.40 | 0.58 |
Mean | 158 | 0.24 | 0.34 | 0.50 | ||
Range | 2–9 | 0.15–0.36 | 0.18–0.49 | 0.33–0.69 |