Table 3 Codon composition and usage parameters of AKR family genes in cherry.

From: Identification of the AKR gene family in sweet cherry and its response to different abiotic stresses

Gene

The third codon base

Codon Adaptation Index

Codon Bias Index

Frequency of Optimal Codons

Effective Number of Codons

GC content at the third codon position

GC content

Name

T3s

C3s

A3s

G3s

CAI

CBI

Fop

ENc

GC3s

GC

PaAKR1

0.4568

0.2086

0.3372

0.2638

0.199

− 0.087

0.367

51.01

0.358

0.426

PaAKR2

0.45

0.2107

0.3527

0.2627

0.202

− 0.079

0.367

54.63

0.358

0.427

PaAKR3

0.4419

0.2135

0.349

0.2607

0.213

− 0.054

0.385

47.89

0.363

0.424

PaAKR4

0.3758

0.2758

0.3419

0.2632

0.235

− 0.007

0.416

56.11

0.418

0.445

PaAKR5

0.3346

0.3726

0.1614

0.3782

0.221

0.004

0.416

54.3

0.593

0.521

PaAKR6

0.3755

0.3105

0.2852

0.2669

0.223

0.023

0.434

54.21

0.458

0.488

PaAKR7

0.4203

0.1884

0.3088

0.2813

0.305

0.122

0.481

54.85

0.383

0.469

PaAKR8

0.4

0.28

0.3

0.261

0.208

− 0.02

0.408

56.76

0.426

0.476

PaAKR9

0.4056

0.2932

0.3059

0.2511

0.241

0.05

0.444

49.1

0.424

0.451

PaAKR10

0.378

0.3374

0.2874

0.2585

0.239

0.041

0.439

51.31

0.465

0.473

PaAKR11

0.3346

0.2874

0.3008

0.3648

0.202

− 0.095

0.359

53.74

0.494

0.467

PaAKR12

0.3048

0.3571

0.2477

0.352

0.211

− 0.069

0.379

56.79

0.552

0.499

PaAKR13

0.3279

0.3522

0.2686

0.3091

0.194

− 0.056

0.382

55.83

0.515

0.48

PaAKR14

0.4138

0.1862

0.3587

0.2808

0.168

− 0.117

0.344

53.32

0.367

0.443

PaAKR15

0.4408

0.2776

0.3111

0.2464

0.271

0.032

0.438

58.24

0.401

0.44

PaAKR16

0.2179

0.359

0.3529

0.36

0.182

− 0.079

0.373

53.54

0.539

0.457

PaAKR17

0.3662

0.2746

0.3183

0.2846

0.185

− 0.007

0.406

57.11

0.44

0.469

PaAKR18

0.447

0.25

0.2422

0.2895

0.186

− 0.022

0.397

53.8

0.423

0.463

PaAKR19

0.4793

0.1931

0.3265

0.2271

0.196

− 0.019

0.406

49.63

0.335

0.447

PaAKR20

0.4029

0.2806

0.3089

0.2232

0.165

− 0.109

0.361

60.26

0.405

0.48

PaAKR21

0.439

0.3008

0.2308

0.2447

0.175

− 0.087

0.348

61

0.435

0.473

PaAKR22

0.4

0.375

0.2479

0.219

0.267

0.085

0.483

56.07

0.469

0.5

PaAKR23

0.3477

0.3046

0.3288

0.2551

0.175

− 0.041

0.392

59.8

0.445

0.468

PaAKR24

0.4086

0.2473

0.337

0.2531

0.207

− 0.043

0.386

53.33

0.389

0.445

PaAKR25

0.384

0.2827

0.2691

0.3362

0.215

− 0.102

0.36

61

0.479

0.484

PaAKR26

0.4153

0.2669

0.2652

0.3287

0.225

− 0.058

0.382

53.93

0.457

0.466

PaAKR27

0.4458

0.2369

0.2656

0.3018

0.217

− 0.103

0.352

52.77

0.419

0.47

PaAKR28

0.4458

0.241

0.2355

0.313

0.221

− 0.033

0.39

55.94

0.44

0.485

PaAKR29

0.3975

0.236

0.3174

0.2949

0.224

0.002

0.408

50.97

0.418

0.479

PaAKR30

0.403

0.2388

0.3419

0.2863

0.205

− 0.001

0.414

53.8

0.402

0.454

PaAKR31

0.3913

0.2681

0.3129

0.2851

0.201

− 0.074

0.371

59.2

0.426

0.466

PaAKR32

0.4029

0.2086

0.3692

0.2735

0.175

− 0.085

0.365

53.88

0.368

0.435

PaAKR33

0.4058

0.2283

0.3489

0.2823

0.19

− 0.07

0.374

55.78

0.389

0.445

PaAKR34

0.4436

0.2218

0.3563

0.2488

0.199

− 0.126

0.345

53.45

0.355

0.427

PaAKR35

0.437

0.2185

0.301

0.29

0.196

− 0.025

0.406

55.64

0.399

0.465

PaAKR36

0.3288

0.4247

0.3514

0.1449

0.254

0.019

0.44

42.01

0.451

0.451

PaAKR37

0.3267

0.396

0.1684

0.3444

0.208

0.016

0.433

61

0.592

0.534

PaAKR38

0.4286

0.1837

0.3258

0.3125

0.191

− 0.09

0.36

52.61

0.377

0.45

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