Table 1 DEGs involved in DNA repair, calcification and coral-Symbiodiniaceae symbiosis of A.gemmifera juveniles under high pCO2.

From: Acclimation mechanisms of reef-building coral Acropora gemmifera juveniles to long-term CO2-driven ocean acidification

Description

log2 Fold change (p value)

3 d p.s. pH 7.54 vs 3 d p.s. pH 8.14

40 d p.s. pH 7.54 vs 40 d p.s. pH 8.14

40 d p.s. pH 7.54 vs 3 d p.s. pH 7.54

DNA repair

ATP-dependent DNA helicase Q

1.41*, 1.88***

-1.98*

2.95***, 1.55*, 2.38***, 2.07*, 3.09*, 4.01*,1.10*

ATP-dependent DNA helicase hus2/rqh1

ND

ND

2.07**, 2.10***, 3.11***

ATP-dependent DNA helicase PIF1-like

ND

ND

1.62*, 1.33*

N-glycosylase/DNA lyase-like

1.02*

ND

ND

DNA excision repair protein ERCC-6

-1.50*

1.69**

ND

DNA repair protein XRCC1

ND

ND

1.54*

Calcification

Skeletal organic matrix protein 1

ND

ND

2.86***, 2.54***, 2.64***

Skeletal organic matrix protein 4

-1.94***

ND

ND

Skeletal organic matrix protein 3

-1.33**

ND

-4.03***, -3.34***, -3.59***

Skeletal organic matrix protein 2

Infinity***, 1.85*

3.20***

-3.41***, -2.88***, -4.84***, -3.87***

Skeletal organic matrix protein 5

-Infinity***, 1.13*

ND

-1.64**, -1.86*,-1.72**, -2.93***, -2.58***, -2.24***, 1.52*, 2.62**, 1.46*, -1.45*, -2.79***, -3.71**, -5.08***, -3.25***, -1.85*, 2.12*

Skeletal organic matrix protein 7

ND

ND

-2.01***, -1.82***

Skeletal organic matrix protein 8

ND

ND

-1.36*

Acidic skeletal organic matrix protein

1.77***, -1.01***

4.92***, 2.85***, -1.20*

-1.48**, -1.57***, -1.11**, -1.25***, -2.71***

Secreted acidic protein

-1.14**

ND

-3.38***,-3.79***, -2.13***,-1.02***

Galaxin

ND

ND

-3.85***, -2.04***, -2.08***, -2.22***, 1.80***, 1.64***, 1.92**, -5.25***, -6.84***, -7.88***

Coral-dinoflagellate symbiosis

Macrophage mannose receptor

Infinity***, -1.34***

ND

1.83***

Mannose receptor, C type

1.43*, 2.98***

ND

-1.67**, -4.75***, 1.83***, -2.02***, -Infinity***

C-type mannose receptor 2

-1.64***, -1.78***

ND

ND

D-galactoside-specific lectin

-1.58***

ND

2.48**

P-selectin

ND

ND

1.18***

collectin

Infinity*

ND

1.49***

Intelectin

ND

ND

1.93**

CD36 antigen

2.39***

-1.35**

-1.23***

Toll-like receptor 2

1.92***

ND

ND

scavenger receptor cysteine-rich type 1 protein

-1.86*, -1.72*

ND

1.96**, 1.37**

ficolin-2

ND

-1.38*

1.89**

Complement C2

-1.36***

ND

ND

Complement C3

-1.26***

ND

ND

  1. ND, not detected; Infinity, up-regulated from 0; -Infinity, down-regulated to 0;
  2. *p < 0.05, **p < 0.01, ***p < 0.001.
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