Table 4 HA and NA classification of amplicons generated using Bento lab pro from sample set 1. Subtypes were characterised by manual mapping to a non-redundant reference gene set downloaded from GISAID.
From: Development of a portable avian influenza virus characterisation system: bringing the inside-out
Sample no. | Sample name | Location | Year | Known subtype | GISAID mapping |
|---|---|---|---|---|---|
1 | W1300077_c235 | Kaituna | 2013 | H4N2 | H4N2 |
2 | NZ0700106_17 | Turua | 2007 | H5N7 | H5N7 |
3 | NZ0700202_15 | Lake Te Rotokare | 2007 | H4N6 | H4N6 |
4 | NZ0700202_24 | Lake Te Rotokare | 2007 | H3N8 | H3N8 |
5 | NZ0700316_2 | Lake Aniwhenua | 2007 | H12N5 | H12N5 |
6 | NZ0700316_53 | Lake Aniwhenua | 2007 | H5N2 | H5N2 |
8 | NZ0800177_28 | Kaituna | 2008 | H5N3 | H5N3 |
10 | NZ0800177_51 | Kaituna | 2008 | H3N1 | H3N1 |
