Table 3 Genes annotated in the chloroplast genomes.
Category | Gene group | Gene name |
|---|---|---|
Photosynthesis | Subunits of photosystem I | psaA,psaB,psaC,psaI,psaJ |
Subunits of photosystem II | psbA,psbB,psbC,psbD,psbE,psbF,psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ | |
Subunits of NADH dehydrogenase | ndhA*,ndhB*(2),ndhC,ndhD,ndhE,ndhF,ndhG,ndhH,ndhI,ndhJ,ndhK | |
Subunits of cytochrome b/f complex | petA,petB*,petD*,petG,petL,petN | |
Subunits of ATP synthase | atpA,atpB,atpE,atpF*,atpH,atpI | |
Large subunit of rubisco | rbcL | |
Subunits photochlorophyllide reductase | – | |
Self-replication | Proteins of large ribosomal subunit | rpl14,rpl16*,rpl2*(2),rpl20,rpl22,rpl23(2),rpl32,rpl33,rpl36 |
Proteins of small ribosomal subunit | rps11,rps12**(2),rps14,rps15(2),rps16*,rps18,rps19(2),rps2,rps3,rps4,rps7(2),rps8 | |
Subunits of RNA polymerase | rpoA,rpoB,rpoC1,rpoC2 | |
Ribosomal RNAs | rrn16(2),rrn23(2),rrn4.5(2),rrn5(2) | |
Transfer RNAs | trnA-UGC*(2),trnC-GCA,trnD-GUC,trnE-UUC,trnF-GAA,trnG-GCC*,trnG-UCC,trnH-GUG(2),trnI-CAU(2),trnI-GAU*(2),trnK-UUU*,trnL-CAA(2),trnL-UAA*,trnL-UAG,trnM-CAU(2),trnN-GUU(2),trnP-UGG,trnQ-UUG,trnR-ACG(2),trnR-UCU,trnS-GCU,trnS-GGA,trnS-UGA,trnT-GGU,trnT-UGU,trnV-GAC(2),trnV-UAC*,trnW-CCA,trnY-GUA,trnfM-CAU(2) | |
Other genes | Maturase | matK |
Protease | clpP | |
Envelope membrane protein | cemA | |
Acetyl-CoA carboxylase | – | |
c-type cytochrome synthesis gene | ccsA | |
Translation initiation factor | infA | |
other | – | |
Genes of unknown function | Conserved hypothetical chloroplast ORF | ycf3**,ycf4 |
