Table 5 Statistical analysis of codon usage bias in chloroplast genomes.
AminoAcid | Codon | RSCU | Numbers | AminoAcid | Codon | RSCU | Numbers |
|---|---|---|---|---|---|---|---|
Ter(*) | UAA | 1.699 | 47 | Met(M) | AUG | 6.970 | 463 |
UAG | 0.651 | 18 | GUG | 0.030 | 2 | ||
UGA | 0.651 | 18 | Asn(N) | AAC | 0.506 | 202 | |
Ala(A) | GCA | 1.204 | 378 | AAU | 1.494 | 597 | |
GCC | 0.570 | 179 | Pro(P) | CCA | 1.047 | 224 | |
GCG | 0.443 | 139 | CCC | 0.888 | 190 | ||
GCU | 1.784 | 560 | CCG | 0.458 | 98 | ||
Cys(C) | UGC | 0.473 | 52 | CCU | 1.608 | 344 | |
UGU | 1.527 | 168 | Gln(Q) | CAA | 1.553 | 517 | |
Asp(D) | GAC | 0.423 | 150 | CAG | 0.447 | 149 | |
GAU | 1.577 | 559 | Arg(R) | AGA | 1.784 | 366 | |
Glu(E) | GAA | 1.501 | 779 | AGG | 0.629 | 129 | |
GAG | 0.499 | 259 | CGA | 1.272 | 261 | ||
Phe(F) | UUC | 0.684 | 374 | CGC | 0.497 | 102 | |
UUU | 1.316 | 720 | CGG | 0.395 | 81 | ||
Gly(G) | GGA | 1.587 | 590 | CGU | 1.423 | 292 | |
GGC | 0.422 | 157 | Ser(S) | AGC | 0.461 | 109 | |
GGG | 0.699 | 260 | AGU | 1.240 | 293 | ||
GGU | 1.291 | 480 | UCA | 1.041 | 246 | ||
His(H) | CAC | 0.517 | 116 | UCC | 1.058 | 250 | |
CAU | 1.483 | 333 | UCG | 0.491 | 116 | ||
Ile(I) | AUA | 0.926 | 502 | UCU | 1.709 | 404 | |
AUC | 0.542 | 294 | Thr(T) | ACA | 1.133 | 304 | |
AUU | 1.532 | 831 | ACC | 0.693 | 186 | ||
Lys(K) | AAA | 1.460 | 757 | ACG | 0.466 | 125 | |
AAG | 0.540 | 280 | ACU | 1.707 | 458 | ||
Leu(L) | CUA | 0.869 | 308 | Val(V) | GUA | 1.520 | 445 |
CUC | 0.409 | 145 | GUC | 0.512 | 150 | ||
CUG | 0.290 | 103 | GUG | 0.509 | 149 | ||
CUU | 1.261 | 447 | GUU | 1.458 | 427 | ||
UUA | 2.074 | 735 | Trp(W) | UGG | 1.000 | 343 | |
UUG | 1.097 | 389 | Tyr(Y) | UAC | 0.419 | 151 | |
UAU | 1.581 | 570 |
