Fig. 9 | Scientific Reports

Fig. 9

From: Immunoinformatics based designing of a multi-epitope cancer vaccine targeting programmed cell death ligand 1

Fig. 9The alternative text for this image may have been generated using AI.

Molecular dynamics simulation of the vaccine construct and TLR4 with cluster analysis. (A) Graphical representation of the RMSD for the vaccine construct and TLR4 complex, highlighting the stability of the system over the course of the simulation, (B) MD analysis plots showing the RMSD matrix for cluster formation, displaying the number of clusters identified from this analysis, (C) RMSD matrix cluster plot for the TLR4-vaccine complex, (D) RMSD matrix cluster plot for TLR4 alone, (E) RMSD matrix cluster plot for the vaccine construct, illustrating the conformational variations and cluster distribution. Plots were generated using XMGrace 5.1.25.

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