Fig. 1 | Scientific Reports

Fig. 1

From: Functional and genomic analyses of plant growth promoting traits in Priestia aryabhattai and Paenibacillus sp. isolates from tomato rhizosphere

Fig. 1

Phylogenetic trees for VMYP6 and VMY10 with their related strains. A total of 133 and 136 common ancestral genes were identified across all studied strains using BLASTN searches with an E-value of 10–30. Genes of P. megaterium ATCC 14581 (a) and P. illinoisensis NBRC 15959 (b) were respectively used as queries. The identified genes were aligned and trimmed individually. For the Priestia genus (a), genes with at least 80% query coverage and 80% identity were selected. For the Paenibacillus genus (b), the selection criteria were set at 90% query coverage and 90% identity. The trees were built with the RAxML algorithm77, and visualized and annotated using iTOL78. Tree reliability was assessed through bootstrapping with 200 and 300 replicates, respectively, using the MRE-based Bootstopping criterion77. Type strains are indicated with a blue star.

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