Table 1 Genes associated with PGP traits in the genomes of P. aryabhattai VMYP6 and Paenibacillus sp. VMY10.

From: Functional and genomic analyses of plant growth promoting traits in Priestia aryabhattai and Paenibacillus sp. isolates from tomato rhizosphere

Function

VMYP6

VMY10

Gene name

Locus tag

Gene name

Locus tag

Phytohormone production:IAA

trpA; trpB; trpC; trpD; trpE; trpF

11090; 11095; 11105; 11110; 11115; 11100

dhaS; ipdC; trpA; trpB; trpC; trpD; trpE; trpF; yclB;yclC; ysnE

08935; 00590; 27570; 27575; 27585; 27590; 27595; 27580; 21950; 22645; 13575

Phytohormone production: CK

log; miaA; miaB; yvdD

24170; 10010; 10040; 28125

miaA; miaB; yvdD

10935; 3320; 17750

Siderophore synthesis/Fe-uptake

efeU; feoA; feoB; pchA; pchD; rhbA; rhbB; rhbC; rhbD; rhbE; rhbF; dhbA; dhbB

22605; 16415; 16420; 13950; 30570; 09810; 09805; 09800; 09795; 09790; 09780; 17720; 12

rhbD; rhbA; fbpC; fbpA; dhbA; dhbB; dhbC; dhbE; dhbF

29,820; 30125; 30160; 30165; 21135; 21150; 21140; 21145; 21155

Phosphate solubilization and mineralization

gcd; phoA; phoD; phoP; phoR; pqqE; pqqF; pqqG; pstA; pstB; pstC; pstS

03260; 15720; 18730; 13325; 13320; 19030; 10205; 17730; 12600; 12060; 12605; 12610

phoR; phoP; pstC; pstA; pstB; phoA; pqqF; gcd; pqqG; pqqE; pstS

01400; 01405; 25465; 25470; 01415; 02710; 03180; 06615; 13235; 22615; 25460

Motility, chemotaxis and attachment to plant surfaces

fhlA; fhlB; fhlF; flbD; flgB; flgC; flgD; flgE; flgG; flgK; flgL; flgM; flgN; fliD; fliE; fliF; fliG; fliH; fliJ; fliK; fliL; fliM; fliNY; fliOZ; flip; fliQ; fliR; fliS; fliT; fliW

cheA; cheB; cheD; cheR; cheV; cheW; cheY; hemAT; mcp; motA; motB

10360; 10365; 10355; 10410; 10470; 10465; 10420; 10415; 18515; 18645; 18650; 18635; 18640; 18695; 10460; 10455; 10450; 10445; 10435; 10425; 10405; 10400; 10395; 10385; 10380; 10375; 10370; 18605; 18705; 18655; 20240; 10345; 10330; 11130; 14470; 10335; 10390; 08940; 27175; 23980; 23985

flgB; flgC; fliE; fliF; fliG; fliH; fliI; flgD; flgE; flbD; fliL; fliM; fliN; cheY; fliOZ; fliP; fliQ; fliR; flhB; flhA; flhF; fliA; mcp; flgF; flgG; flgK; flgL; flaA; fliS; motB; notA

02885; 02890; 02895; 02900; 02905; 02910; 02915; 02935; 02945; 02950; 02955; 02960; 02965; 02970; 02975; 02980; 02985; 02990; 02995; 03000; 03005; 03045; 13515; 22925; 22930; 23065; 23070; 23090; 23110; 23280; 23285

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