Table 3 Correlation of mobile genetic elements (MGEs) with bacterial genera, antimicrobial resistance genes (ARGs), and virulence genes.
Gene | Class | Function | Feed (%) | Chicken_Gut (%) | Droppings (%) | Fish_Inetestine (%) | Sediment (%) |
|---|---|---|---|---|---|---|---|
TETW | Tetracyclines | Tetracycline_resistance_ribosomal_protection_proteins | 0 | 8.34 | 91.66 | 0 | 0 |
MLS23S | Macrolide-lincosamidestreptogramin | Macrolide-resistant_23S_rRNA_mutation | 4.41 | 21.57 | 42.44 | 0.23 | 31.34 |
A16S | Aminoglycosides | Aminoglycoside- resistant_16S_ribosomal_subunit_protein | 1.56 | 5.9 | 47.11 | 0.13 | 45.3 |
ERMB | Macrolide-lincosamidestreptogramin | 23S_rRNA_methyltransferases | 0 | 4.39 | 91.06 | 0 | 4.55 |
RPOB | Rifampin | Rifampin-resistant_betasubunit_of_RNA_polymerase_RpoB | 1.1 | 0.91 | 42.57 | 0.27 | 55.15 |
TUFAB | Elfamycins | EF-Tu_inhibition | 1.68 | 2.79 | 53.84 | 0.07 | 41.63 |
O23S | Oxazolidinone | Oxazolidinone-resistant_23S_rRNA_mutation | 7.1 | 22.31 | 43.5 | 0.55 | 26.54 |
TETM | Tetracyclines | Tetracycline_resistance_ribosomal_protection_proteins | 0 | 0 | 100 | 0 | 0 |
GYRA | Fluoroquinolones | Fluoroquinolone-resistant_DNA_topoisomerases | 1.06 | 0 | 29.42 | 0 | 69.51 |
SULI | Sulfonamides | Sulfonamide-resistant_dihydropteroate_synthases | 0 | 0 | 96.58 | 0 | 3.42 |
APH3- DPRIME | Aminoglycosides | Aminoglycoside_O-phosphotransferases | 0 | 5.36 | 84.64 | 0 | 9.99 |
TETX | Tetracyclines | Tetracycline_inactivation_enzymes | 0 | 0 | 93.77 | 0 | 6.23 |
SULII | Sulfonamides | Sulfonamide-resistant_dihydropteroate_synthases | 0 | 0.53 | 95.18 | 0 | 4.29 |
TETO | Tetracyclines | Tetracycline_resistance_ribosomal_protection_proteins | 0 | 0 | 100 | 0 | 0 |
TETL | Tetracyclines | Tetracycline_resistance_MFS_efflux_pumps | 0 | 9.89 | 90.11 | 0 | 0 |
ANT6 | Aminoglycosides | Aminoglycoside_O-nucleotidyltransferases | 0 | 4.15 | 86.55 | 0 | 9.3 |
TETQ | Tetracyclines | Tetracycline_resistance_ribosomal_protection_proteins | 0 | 3.29 | 94.47 | 0 | 2.25 |
CMX | Phenicol | Phenicol_resistance_MFS_efflux_pumps | 0 | 20 | 73.46 | 0 | 6.53 |
FLOR | Phenicol | Phenicol_resistance_MFS_efflux_pumps | 0 | 0 | 55.47 | 0 | 44.53 |
PARE | Aminocoumarins | Aminocoumarin-resistant_DNA_topoisomerases | 1.68 | 0 | 25.38 | 0 | 72.94 |
AAC6-PRIME | Aminoglycosides | Aminoglycoside_N-acetyltransferases | 0 | 5.5 | 90.46 | 0 | 4.04 |
TETZ | Tetracyclines | Tetracycline_resistance_MFS_efflux_pumps | 0 | 13.49 | 76.19 | 0 | 10.32 |
ANT4-PRIME | Aminoglycosides | Aminoglycoside_O-nucleotidyltransferases | 0 | 20.56 | 78.14 | 0 | 1.3 |
FEXA | Drug_and_biocide_resistan ce | Drug_and_biocide_MFS_efflux_pumps | 0 | 3.82 | 49.19 | 0 | 46.99 |
OPTRA | Multi-drug_resistance | Multi-drug_ABC_efflux_pumps | 0 | 0 | 0 | 0 | 100 |
ERMF | Macrolide-lincosamidestreptogramin | 23S_rRNA_methyltransferases | 0 | 0 | 86.89 | 0 | 13.11 |
CFR | Macrolide-lincosamidestreptogramin | 23S_rRNA_methyltransferases | 0 | 8.91 | 91.09 | 0 | 0 |
ERMC | Macrolide-lincosamidestreptogramin | 23S_rRNA_methyltransferases | 0 | 6.93 | 93.07 | 0 | 0 |
MUXB | Multi-drug_resistance | Multi-drug_RND_efflux_pumps | 0 | 0 | 35.38 | 0 | 64.62 |
APH6 | Aminoglycosides | Aminoglycoside_O-phosphotransferases | 0 | 2.5 | 82.47 | 0 | 15.03 |
