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Mechanism of action of Astragalus membranaceus for treating diabetic foot ulcers based on single-cell RNA sequencing data and network pharmacology
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  • Published: 10 March 2026

Mechanism of action of Astragalus membranaceus for treating diabetic foot ulcers based on single-cell RNA sequencing data and network pharmacology

  • Xia Li1 na1,
  • Yan Dong2,5 na1,
  • Chong Huang1,
  • Guozhong Zhou2,5,
  • Yanjie Ning3,
  • Yuru Liu3,
  • Ruqin Zhang3,
  • Ying Yang4 &
  • …
  • Nan Chen5 

Scientific Reports , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Computational biology and bioinformatics
  • Diseases
  • Drug discovery

Abstract

Diabetic foot ulcer is a severe complication of diabetes, characterized by impaired wound healing and immune dysregulation. Although Astragalus membranaceus (AM) has been widely used and reported to exert beneficial effects in diabetic complications, its underlying mechanisms of action in DFU remain incompletely understood. This study integrated single-cell RNA sequencing (scRNA-seq) data from a public bioinformatic cohort (GSE245703; 4 non-diabetic foot ulcer (NFU) and 5 diabetic foot ulcer (DFU) samples) with network pharmacology to explore potential molecular mechanisms by which AM may be involved in DFU pathology. scRNA-seq analysis identified ten major cell types within the DFU microenvironment and revealed significant macrophage heterogeneity. Network pharmacology identified 14 active compounds in AM and their predicted targets, some of which overlapped with macrophage-associated differentially expressed genes. Molecular docking suggested strong binding affinities between selected AM compounds and macrophage-associated hub genes. qPCR validation in a clinical cohort (6 NFU and 9 DFU patients) confirmed differential expression of several candidate hub genes overlapping with predicted AM targets. Collectively, these results provide a single-cell–resolved, systems-level framework that links AM components to macrophage-associated molecular processes in DFU, offering a hypothesis-generating basis for future functional and translational studies.

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Data availability

The scRNA-seq data used in this study were obtained from the Gene Expression Omnibus database under accession number GSE245703 and are available at the following URL: https://identifiers.org/geo: GSE245703.

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Funding

This study was supported by the Yunnan Provincial Science and Technology Department (202301BE070001-039), and the Project for Establishing a Flagship Department of Integrated Chinese and Western Medicine.

Author information

Author notes
  1. These authors contributed equally: Xia Li and Yan Dong.

Authors and Affiliations

  1. Faculty of Life Science and Technology & The Affiliated Anning First People’s Hospital, Kunming University of Science and Technology, Kunming, Yunnan, China

    Xia Li & Chong Huang

  2. School of Basic Medical Sciences, Kunming University of Science and Technology, Kunming, Yunnan, China

    Yan Dong & Guozhong Zhou

  3. Department of Dermatology, Anning Hospital of Traditional Chinese Medicine, Kunming, Yunnan, China

    Yanjie Ning, Yuru Liu & Ruqin Zhang

  4. Department of Endocrinology, Affiliated Hospital of Yunnan University, Kunming, Yunnan, China

    Ying Yang

  5. Department of Endocrinology, The Affiliated Anning First People’s Hospital of Kunming University of Science and Technology, Kunming, Yunnan, China

    Yan Dong, Guozhong Zhou & Nan Chen

Authors
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Contributions

X.L. conceived and designed the study, performed data analysis, and drafted the manuscript. C.H. and Y.D. contributed to methodology and validation. G.Z. and N.C. supervised the study and revised the manuscript. Y.N., Y.L. and R.Z. collected samples. N.C. and Y.Y. ainistered the project and provided resources. All authors read and approved the final manuscript.

Corresponding authors

Correspondence to Ying Yang or Nan Chen.

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Competing interests

The authors declare no competing interests.

Informed consent

Informed consent was obtained from all subjects involved in the study.

Institutional Review Board Statement

The study was conducted in accordance with the Declaration of Helsinki and approved by the Ethics Committee of Anning First People’s Hospital (Approval No: Lun Shen 2025-026 (Other)-01).

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Li, X., Dong, Y., Huang, C. et al. Mechanism of action of Astragalus membranaceus for treating diabetic foot ulcers based on single-cell RNA sequencing data and network pharmacology. Sci Rep (2026). https://doi.org/10.1038/s41598-026-41921-5

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  • Received: 09 November 2025

  • Accepted: 23 February 2026

  • Published: 10 March 2026

  • DOI: https://doi.org/10.1038/s41598-026-41921-5

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Keywords

  • Diabetic foot ulcer
  • single-cell RNA sequencing
  • macrophages
  • immune microenvironment
  • Astragalus membranaceus
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