Abstract
A broad spectrum of seabed deformation structures, including pockmarks and domes, related to various processes, have been observed on continental margins worldwide. This study provides the first regional-scale inventory and quantitative characterization of pockmarks and domes potentially linked to subsurface fluid-escape processes on the continental shelf and upper slope in the Gulf of Lions (NW Mediterranean). Using high-resolution multibeam bathymetry and seismic reflection data, approximately 29,000 pockmarks and domes were identified. Morphometric and seismic analyses reveal distinct groups that differ in size, shape, and spatial organization. Among them a widespread population of domes rooted on the Holocene maximum flooding surface, which represent ~ 85% of the occurrences. The remaining 15% are pockmarks, divided into five main subtypes. Spatial association of domes and pockmarks suggests a genetic relationship between dome formation and subsequent collapse (pockmarks). Machine learning–based spatial modeling extends the estimated total to ~ 80,000 between 10 and 1000 m water depth, including zones not covered by swath-bathymetric surveys. Among various controlling factors, sediment thickness, water depth, and grain-size variability exert primary controls on the distribution of pockmarks and domes. These results demonstrate that seabed deformations in the Gulf of Lions are spatially organized, reflecting the interplay between fluid-related processes, stratigraphic architecture, and sediment properties.
Similar content being viewed by others
Data availability
Geophysical data: The raw public data, acquired by IFREMER vessels, are openly available on the SISMER website at [https://data.ifremer.fr/#/home]. Other raw geophysical data that support the findings of this study are available upon request to MAB with the permission of third party owners (see Supplementary Table 1). The surface sedimentological data that support the findings of this study are openly available on SEANOE website at [https://doi.org/10.17882/81430]. The interpretations that support the findings of this study are available from the corresponding author, AL, upon reasonable request.
References
Van Rensbergen, P., Hillis, R. R., Maltman, A. J. & Morley, C. K. Subsurface Sediment Mobilization Vol. 216 (The Geological Society, 2003).
Andresen, K. J. Fluid flow features in hydrocarbon plumbing systems: What do they tell us about the basin evolution?. Mar. Geol. 332–334, 89–108 (2012).
Suess, E. Marine cold seeps and their manifestations: Geological control, biogeochemical criteria and environmental conditions. Int. J. Earth Sci. 103, 1889–1916 (2014).
Gay, A. et al. Isolated seafloor pockmarks linked to BSRs, fluid chimneys, polygonal faults and stacked Oligocene-Miocene turbiditic palaeochannels in the Lower Congo Basin. Mar. Geol. 226, 25–40 (2006).
Judd, A. & Hovland, M. Seabed Fluid Flow: The Impact on Geology, Biology and the Marine Environment (Cambridge University Press, 2007). https://doi.org/10.1017/CBO9780511535918.
Vaknin, I., Aharonov, E., Holtzman, R. & Katz, O. Gas seepage and pockmark formation from subsurface reservoirs: Insights from table-top experiments. J. Geophys. Res. Solid Earth 129, e2023JB028255 (2024).
Kvenvolden, K. A. Gas hydrates—Geological perspective and global change. Rev. Geophys. 31, 173–187 (1993).
Whiticar, M. J. Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane. Chem. Geol. 161, 291–314 (1999).
Tissot, B. P. & Welte, D. H. Petroleum Formation and Occurrence (Springer, 1984). https://doi.org/10.1007/978-3-642-87813-8.
King, L. H. & MacLean, B. Pockmarks on the Scotian Shelf. Geol. Soc. Am. Bull. 81, 3141–3148 (1970).
Pilcher, R. & Argent, J. Mega-pockmarks and linear pockmark trains on the West African continental margin. Mar. Geol. 244, 15–32 (2007).
Spatola, D., Rovere, M., Casalbore, D. & Chiocci, F. L. Pockmarks of the Mediterranean region seas: A comprehensive geodatabase for marine geomorphological analysis. Sci. Data 12, 1049 (2025).
León, R. et al. Pockmarks on either side of the Strait of Gibraltar: Formation from overpressured shallow contourite gas reservoirs and internal wave action during the last glacial sea-level lowstand?. Geo-Mar. Lett. 34, 131–151 (2014).
Barry, M., Boudreau, B. & Johnson, B. Gas domes in soft cohesive sediments. Geology 40, 379–382 (2012).
Diercks, A.-R. et al. High-resolution seismo-acoustic characterization of Green Canyon 600, a perennial hydrocarbon seep in Gulf of Mexico deep water. Mar Geophys Res 40, 357–370 (2019).
Hovland, M. & Judd, A. G. The global production of methane from shallow submarine sources. Cont. Shelf Res. 12, 1231–1238 (1992).
Napoli, S. et al. Comprehensive global inventory of submarine mud volcanoes. Sci Data 12, 382 (2025).
Naudts, L. et al. Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea. Mar. Geol. 227, 177–199 (2006).
Rise, L., Bellec, V. K., Chand, S. & Bøe, R. Pockmarks in the southwestern Barents Sea and Finnmark fjords. https://nynjg.geologi.no/publications/pockmarks-in-the-southwestern-barents-sea-and-finnmark-fjords/ (2014).
Cartwright, J., Huuse, M. & Aplin, A. Seal bypass systems. AAPG Bull. 91, 1141–1166 (2007).
Garcia-Garcia, A. et al. Shallow gas off the Rhone prodelta. Gulf of Lions. Marine Geol. 234, 215–231 (2006).
Mascle, A., Vially, R., Deville, E., Biju-Duval, B. & Roy, J. P. The petroleum evaluation of a tectonically complex area: The western margin of the Southeast Basin (France). Mar. Pet. Geol. 13, 941–961 (1996).
Lofi, J., Berné, S., Tesson, M., Seranne, M. & Pezard, P. Giant solution-subsidence structure in the Western Mediterranean related to deep substratum dissolution. Terra Nova 24, 181–188 (2012).
Widhen, F. et al. Long-term evolution of a carbonate reservoir submitted to fresh, saline and thermal waters interactions—Jurassic carbonates in the coastal area of the Gulf of Lion margin (southern France). Bull. Soc. Géol. France 194, 7 (2023).
Baztan, J. et al. Axial incision: The key to understand submarine canyon evolution (in the western Gulf of Lion). Mar. Pet. Geol. 22, 805–826 (2005).
Lofi, J. et al. Plio-Quaternary prograding clinoform wedges of the western Gulf of Lion continental margin (NW Mediterranean) after the Messinian Salinity Crisis. Mar. Geol. 198, 289–317 (2003).
Rabineau, M. et al. Paleo sea levels reconsidered from direct observation of paleoshoreline position during Glacial Maxima (for the last 500,000 yr). Earth Planet. Sci. Lett. 252, 119–137 (2006).
Bassetti, M. A. et al. The 100-ka and rapid sea level changes recorded by prograding shelf sand bodies in the Gulf of Lions (western Mediterranean Sea). Geochem. Geophys. Geosyst. 9, Q11R05 (2008).
Bassetti, M. A. et al. Sand bodies at the shelf edge in the Gulf of Lions (Western Mediterranean): Deglacial history and modern processes. Mar. Geol. 234, 93–109 (2006).
Tesson, M. et al. Quaternary “Compound” incised valley in a microtidal environment, Roussillon Continental Shelf, Western Gulf of Lions, France. J. Sediment. Res. 81, 708–729 (2011).
Berné, S. et al. A “natural sand plant” at the shelf edge in the low-energy Gulf of Lions, western Mediterranean Sea. Geology 52, 911–916 (2024).
Berné, S., Lericolais, G., Marsset, T., Bourillet, J. F. & de Batist, M. Erosional shelf sand ridges and lowstand shorefaces: Examples from tide and wave dominated environments of France. J. Sediment. Res. 68, 540–555 (1998).
Swift, D. J. P. Delaware Shelf Valley: Estuary retreat path, not drowned river valley. Geol. Soc. Am. Bull. 84, 2743–2748 (1973).
Swift, D. J. P., Sears, P. C., Bohlke, B. & Hunt, R. Evolution of a shoal retreat massif, North Carolina Shelf: Inferences from areal geology. Mar. Geol. 27, 19–42 (1978).
Berné, S., Jouet, G., Bassetti, M. A., Dennielou, B. & Taviani, M. Late Glacial to Preboreal sea-level rise recorded by the Rhone deltaic system (NW Mediterranean). Mar. Geol. 245, 65–88 (2007).
Bassetti, M. A. et al. Holocene hydrological changes in the Rhône River (NW Mediterranean) as recorded in the marine mud belt. Clim. Past 12, 1539–1553 (2016).
Zecchin, M., Catuneanu, O. & Caffau, M. High-resolution sequence stratigraphy of clastic shelves IX: Methods for recognizing maximum flooding conditions in shallow-marine settings. Mar. Pet. Geol. 156, 106468 (2023).
Aloïsi, J. C. Sur un modèle de sédimentation deltaïque: Contribution à la connaissance des marges passives. (1986).
Bourrin, F. Variabilité et devenir des apports sédimentaires par les fleuves côtiers : Cas du système Têt-littoral roussillonnais dans le golfe du Lion. (Perpignan, 2007).
Piégay, H. et al. OSR—Observatoire Des Sédiments Du Rhône. 12 Années de Recherche Pour La Connaissance et La Gestion Hydro-Sédimentaire Du Fleuve. Bilans et Perspectives Scientifiques. https://archimer.ifremer.fr/doc/00808/92047/ (2022).
Gay, A., Cavailhès, T., Grauls, D., Marsset, B. & Marsset, T. Repeated fluid expulsions during events of rapid sea-level rise in the Gulf of Lion, Western Mediterranean Sea. Bull. Soc. Geol. Fr. 188, 24 (2017).
Riboulot, V., Thomas, Y., Berné, S., Jouet, G. & Cattaneo, A. Control of Quaternary sea-level changes on gas seeps. Geophys. Res. Lett. 41, 4970–4977 (2014).
Krämer, K. et al. Abrupt emergence of a large pockmark field in the German Bight, Southeastern North Sea. Sci. Rep. 7, 5150 (2017).
Conrad, O. et al. System for automated geoscientific analyses (SAGA) v. 2.1.4. Geosci. Model Dev. 8, 1991–2007 (2015).
Uber Technologies. Uber’s H3 Hexagonal Hierarchical Geospatial Indexing System. Github https://github.com/uber/h3 (2023).
Jouet, G. Enregistrements stratigraphiques des cycles climatiques et glacio-eustatiques du Quaternaire terminal. Modélisations de la marge continentale du Golfe du Lion. (Université de Bretagne Occidentale, 2007).
EMODnet Bathymetry Consortium. EMODnet Digital Bathymetry (DTM 2024). EMODnet Bathymetry Consortium. https://doi.org/10.12770/CF51DF64-56F9-4A99-B1AA-36B8D7B743A1 (2024).
Augris, C. et al. Seabed substrate database from a compilation of sediment samples taken during oceanographic campaigns carried out in the Gulf of Lion by Ifremer, CEFREM, IRSN, CEREGE, FOB, MIO, LECOB, The Conseil Général de l’Hérault and Rhône-Méditerranée-Corse Water Agency. Results of grain size analysis performed on samples. SEANOE https://doi.org/10.17882/81430 (2013).
Shi, Y., et al. Light Gradient Boosting Machine. (Microsoft, 2025).
Lundberg, S. & Lee, S.-I. A Unified Approach to Interpreting Model Predictions. Preprint at https://doi.org/10.48550/arXiv.1705.07874 (2017).
Taner, M. T. & Sheriff, R. E. Application of amplitude, frequency, and other attributes to stratigraphic and hydrocarbon determination: Section 2. Application of seismic reflection configuration to stratigraphic interpretation. (1977).
Hernandez-Molina, F. J. et al. The infralittoral prograding wedge: A new large-scale progradational sedimentary body in shallow water environments. Geo-Mar. Lett. 20, 109–117 (2000).
Brooke, C. M., Trimble, T. J. & Mackay, T. A. Mounded shallow gas sands from the Quaternary of the North Sea: Analogues for the formation of sand mounds in deep water Tertiary sediments?. Geol. Soc. Lond. Spec. Publ. 94, 95–101 (1995).
Cathles, L. M., Su, Z. & Chen, D. The physics of gas chimney and pockmark formation, with implications for assessment of seafloor hazards and gas sequestration. Mar. Pet. Geol. 27, 82–91 (2010).
Koch, S. et al. Gas-controlled seafloor doming. Geology 43, 571–574 (2015).
Loher, M. et al. Seafloor sealing, doming, and collapse associated with gas seeps and authigenic carbonate structures at Venere mud volcano, Central Mediterranean. Deep Sea Res. Part I Oceanogr. Res. Pap. 137, 76–96 (2018).
Ollivier, P., Claude, C., Radakovitch, O. & Hamelin, B. TIMS measurements of 226Ra and 228Ra in the Gulf of Lion, an attempt to quantify submarine groundwater discharge. Mar. Chem. 109, 337–354 (2008).
Schattner, U., Lazar, M., Souza, L. A. P., ten Brink, U. & Mahiques, M. M. P. Pockmark asymmetry and seafloor currents in the Santos Basin offshore Brazil. Geo-Mar. Lett. 36, 457–464 (2016).
Böttner, C. et al. The enigmatic pockmarks of the sandy southeastern North Sea. Geochem. Geophys. Geosyst. 25, e2024GC011837 (2024).
Pau, M., Gisler, G. & Hammer, Ø. Experimental investigation of the hydrodynamics in pockmarks using particle tracking velocimetry. Geo-Mar. Lett. 34, 11–19 (2014).
Coughlan, M. et al. Geological settings and controls of fluid migration and associated seafloor seepage features in the North Irish Sea. Mar. Pet. Geol. 123, 104762 (2021).
Acknowledgements
We thank OFB (notably Grégory Agin), IFREMER (Gwénaël Jouet), Shom (Yann Le Faou), RTE (Jules Lacombe), EDF (Thierry Denois), DGEC (Guillaume Poirier) and Engie (Samuel Lemière) for providing access to data, as well as Genavir and Technoambiente teams for data acquisition. Additional seismic data were acquired by the DEM’EAUX project, funded by the French Government, Région Occitanie, Agence de l’Eau, Perpignan Métropôle and département des Pyrénées Orientales. We are grateful to Marina Rabineau and Estelle Leroux for access to the AMMED cruise dataset, and to Olivier Raynal and Bertil Hébert (CEFREM) for their participation in data acquisition. We also thank Lies Loncke (CEFREM) for valuable suggestions.
Funding
This research did receive funding. André Lion received funding from French Ministry of Higher Education, Research and Space. André Lion received funding from Office Français de la Biodiversité.
Author information
Authors and Affiliations
Contributions
AL contributed to conceptualization, data analysis, interpretation and writing. SB contributed to conceptualization, data acquisition and analysis, interpretation and writing. MAB contributed to conceptualization, interpretation and writing. RJ contributed to conceptualization, interpretation and writing.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.
About this article
Cite this article
Lion, A., Bassetti, MA., Berné, S. et al. Understanding tens of thousands of pockmarks and domes using machine learning (Gulf of Lions, NW Mediterranean Sea). Sci Rep (2026). https://doi.org/10.1038/s41598-026-42740-4
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41598-026-42740-4


