Table 1 Comparison of genomic features and secondary metabolite-associated biosynthetic gene clusters.
Characteristics | NA78T | Anatilimnocola aggregata ETA_A8T 45 | Anatilimnocola floriformis PX40T 74 |
|---|---|---|---|
Genomic features | |||
Genome Size (bp) | 7,974,895 | 9,007,740 | 8,932,131 |
Plasmids | No | No | n.d. |
Genome coverage | 236x | 99x | 10x |
Number of contigs | 1 (circular) | 1 (circular) | 17 |
N50 (Mbp) | 8 | 9 | 6.3 |
L50 | 1 | 1 | 1 |
Completeness (checkM) (%) | 99.4 | 99.4 | 99.3 |
Contamination (checkM) (%) | 1.3 | 1.3 | 2.3 |
DNA G + C content (%) | 58.2 | 57.8 | 58.6 |
Coding density (%) | 87.2 | 87.8 | 88.6 |
Genes (total) | 6303 | 6932 | 7113 |
Genes per Mbp | 790 | 770 | 796 |
Protein-coding genes | 6203 | 6814 | 6998 |
Protein-coding genes per Mbp | 778 | 756 | 783 |
Hypothetical proteins* | 1808 | 1744 | 2156 |
Hypothetical proteins (%) | 29.1 | 25.6 | 30.8 |
rRNAs (5S, 16S, 23S) | 1,1,1 | 1,1,1 | 1,1,1 |
tRNA genes | 67 | 72 | 70 |
Biosynthetic gene clusters | |||
Terpenoid | 5 | 4 | 6 |
NRPS-like | 1 | 2 | 1 |
Type I PKS | 0 | 1 | 0 |
Type III PKS | 0 | 0 | 1 |
Total | 6 | 7 | 8 |
BGCs per Mbp | 0.8 | 0.8 | 0.9 |
