Abstract
This study aimed to evaluate radiomic-based machine learning models for glioma grading on amide proton transfer weighted (APTw) images using explainability algorithms. A total of 102 patients who underwent preoperative MR examinations, including FLAIR, T1-weighted, T1-weighted contrast-enhanced, and APTw images, were included. Two groups of APTw images were analyzed: one corresponding to contrast-enhanced regions of gliomas and the other corresponding to both contrast-enhanced and peritumoral edematous regions of gliomas. Radiomic features were extracted from these regions. Random forest, support vector machine, naïve bayes classifier, and logistic regression models were trained to distinguish grade 4 from non-grade 4 gliomas. These models were analyzed by Shapley values, permutation importance, and the method of anchors. The results of model explainability analysis revealed that the grading performance of these models relied on radiomic features highlighting the heterogeneity of radiologic phenotypes.
Data availability
The data used in this study are available from the corresponding author on reasonable request and with permission of Union Hospital, Tongji Medical College, Huazhong University of Science and Technology.
References
Deng, H. Z. et al. Advances in diffuse glioma assessment: preoperative and postoperative applications of chemical exchange saturation transfer. Front. Neurosci. 18, 1424316 (2024).
Jiang, S. et al. Applications of chemical exchange saturation transfer magnetic resonance imaging in identifying genetic markers in gliomas. NMR Biomed. 36, e4731 (2023).
Suh, C. H. et al. Amide proton transfer-weighted MRI in distinguishing high- and low-grade gliomas: a systematic review and meta-analysis. Neuroradiology 61, 525–534 (2019).
Sotirios, B., Demetriou, E., Topriceanu, C. C. & Zakrzewska, Z. The role of APT imaging in gliomas grading: A systematic review and meta-analysis. Eur. J. Radiol. 133, 109353 (2020).
Zou, T. et al. Differentiating the histologic grades of gliomas preoperatively using amide proton transfer-weighted (APTW) and intravoxel incoherent motion MRI. NMR Biomed. 31 (1). https://doi.org/10.1002/nbm.3850 (2018).
Guo, H. et al. Diagnostic performance of gliomas grading and IDH status decoding A comparison between 3D amide proton transfer APT and four diffusion-weighted MRI models. J. Magn. Reson. Imaging. 56, 1834–1844 (2022).
Jiang, S. et al. Amide proton transfer-weighted magnetic resonance image-guided stereotactic biopsy in patients with newly diagnosed gliomas. Eur. J. Cancer. 83, 9–18 (2017).
Jiang, S. et al. Identifying Recurrent Malignant Glioma after Treatment Using Amide Proton Transfer-Weighted MR Imaging: A Validation Study with Image-Guided Stereotactic Biopsy. Clin. Cancer Res. 25, 552–561 (2019).
Sartoretti, E. et al. Amide proton transfer weighted (APTw) imaging based radiomics allows for the differentiation of gliomas from metastases. Sci. Rep. 11, 5506 (2021).
Wu, M. et al. Amide proton transfer-weighted imaging and derived radiomics in the classification of adult-type diffuse gliomas. Eur. Radiol. 34, 2986–2996 (2024).
Reyes, M. et al. On the Interpretability of Artificial Intelligence in Radiology: Challenges and Opportunities. Radiol. Artif. Intell. 2, e190043 (2020).
Bonato, B., Nanni, L. & Bertoldo, A. Advancing Precision: A Comprehensive Review of MRI Segmentation Datasets from BraTS Challenges (2012–2025). Sens. (Basel). 25 (6), 1838 (2025).
van Griethuysen, J. J. M. et al. Computational Radiomics System to Decode the Radiographic Phenotype. Cancer Res. 77, e104 (2017).
Pedregosa, F. et al. Scikit-learn: Machine Learning in Python. J. Mach. Learn. Res. 12, 2825–2830 (2011).
Lundberg, S. M. & Lee, S. A unified approach to interpreting model predictions. In NIPS’17: Proceedings of the 31st International Conference on Neural Information Processing Systems, 4768–4777 (Curran Associates, Inc, 2017).
Fisher, A., Rudin, C. & Dominici, F. All models are wrong, but many are useful: Learning a variable’s importance by studying an entire class of prediction models simultaneously. J. Mach. Learn. Res. 20, 1–81 (2019).
Ribeiro, M., Singh, S., Guestrin, C. & Anchors High-Precision Model-Agnostic Explanations. Proceedings of the AAAI Conference on Artificial Intelligence 32, (2018).
Zhou, J. et al. Review and consensus recommendations on clinical APT-weighted imaging approaches at 3T: Application to brain tumors. Magn. Reson. Med. 88, 546–574 (2022).
Filimonova, E., Pashkov, A., Borisov, N., Kalinovsky, A. & Rzaev, J. Utilizing the amide proton transfer technique to characterize diffuse gliomas based on the WHO 2021 classification of CNS tumors. Neuroradiol. J. 37, 490–499 (2024).
Acknowledgements
We gratefully thank Zhang Lan and Qin Qian for their help for the lesion delineations in this study.
Funding
This work was supported by the National Natural Science Foundation of China (Grant No.82371945).
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Xuan Gao conceived this study and participated in the literature search, study design, data analysis, data interpretation and wrote the manuscript. Jing Wang participated in data collection and provided critical revision. The authors read and approved the final manuscript.
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Gao, X., Wang, J. The explainability of radiomic-based machine learning models for brain glioma grading on amide proton transfer-weighted images. Sci Rep (2026). https://doi.org/10.1038/s41598-026-44963-x
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DOI: https://doi.org/10.1038/s41598-026-44963-x