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Cytotoxic and apoptotic effects of kaempferol 3-O-rhamnoside from Schima wallichii in HepG2 cells
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  • Published: 25 April 2026

Cytotoxic and apoptotic effects of kaempferol 3-O-rhamnoside from Schima wallichii in HepG2 cells

  • Thuy Mi Pham Lam1,
  • Manh Duc Tran1,
  • Tan Khanh Nguyen2,
  • Tuan Anh Le3,
  • Van Ngo Thai Bich4,
  • Tan Trung Truong5,
  • Phu Tran Vinh Pham6,
  • Hieu Phu Chi Truong7 &
  • …
  • Manh Hung Tran7 

Scientific Reports , Article number:  (2026) Cite this article

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Subjects

  • Biochemistry
  • Cancer
  • Chemical biology
  • Computational biology and bioinformatics
  • Drug discovery
  • Plant sciences

Abstract

Schima wallichii (DC.) Korth is a medicinal plant with notable pharmacological potential but remains poorly characterized. In this study, the crude extract and solvent fractions from Schima wallichii leaves were evaluated for cytotoxic activity against various human cancer cell lines. Both the total extract and its fractions exhibited dose-dependent inhibitory effects on the proliferation of hepatocellular carcinoma HepG2 cells. From the most active fraction, a major flavonoid was isolated and identified as kaempferol-3-O-rhamnoside. In vitro assays revealed that kaempferol-3-O-rhamnoside effectively suppressed HepG2 cell growth and induced apoptosis by activating caspase-3, modulating cell cycle progression, and enhancing the expression of cleaved caspase-3 protein. Complementary in silico analyses showed that K3OR bound favorably to apoptosis-related targets, including caspase-3, caspase-8, caspase-9, and PARP-1, with strong hydrogen-bonding and π-π interactions at their catalytic sites. Molecular dynamics simulations confirmed the high structural stability of the kaempferol-3-O-rhamnoside-caspase 3 complex throughout a 100-ns trajectory, while density functional theory calculations indicated a moderate HOMO-LUMO energy gap (6.48 eV), semi-soft electronic nature, and a global electrophilicity index (ω = 3.18 eV), consistent with its favorable binding reactivity. These findings suggest that K3OR exerts cytotoxic effects through caspase-mediated apoptotic activation, providing mechanistic insight into its anti-proliferative activity in liver cancer cells.

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Acknowledgements

We would like to thank to School of Medicine and Pharmacy and VN-UK Institute for Research and Executive Education, the University of Danang for providing the infrastructure and facilities to perform this study.

Funding

This research is supported financially by the Fund of Ministry of Education and Training, Vietnam under project number B2024.DNA.06. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Author information

Authors and Affiliations

  1. University of Education, The University of Danang, Danang City, 550000, Vietnam

    Thuy Mi Pham Lam & Manh Duc Tran

  2. Scientific Management Department, Dong A University, Danang City, 550000, Vietnam

    Tan Khanh Nguyen

  3. Vietnam National Museum of Nature, VAST, 321 Huynh Thuc Khang, Hue City, 49153, Vietnam

    Tuan Anh Le

  4. Faculty of Chemical Engineering, University of Science and Technology, The University of Danang, Danang City, 550000, Vietnam

    Van Ngo Thai Bich

  5. VN-UK Institute for Research and Executive Education, The University of Danang, Danang City, 550000, Vietnam

    Tan Trung Truong

  6. Faculty of Technology, Dong Nai Technology University, Bien Hoa City, 76000, Dong Nai, Vietnam

    Phu Tran Vinh Pham

  7. School of Medicine and Pharmacy, The University of Danang, Danang City, 550000, Vietnam

    Hieu Phu Chi Truong & Manh Hung Tran

Authors
  1. Thuy Mi Pham Lam
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  2. Manh Duc Tran
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  3. Tan Khanh Nguyen
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  4. Tuan Anh Le
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  5. Van Ngo Thai Bich
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  7. Phu Tran Vinh Pham
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  8. Hieu Phu Chi Truong
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  9. Manh Hung Tran
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Corresponding author

Correspondence to Manh Hung Tran.

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Competing interests

The authors declare no competing interests.

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There were no human subjects included in this study, and informed consent was not applicable.

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Cite this article

Lam, T.M.P., Tran, M.D., Nguyen, T.K. et al. Cytotoxic and apoptotic effects of kaempferol 3-O-rhamnoside from Schima wallichii in HepG2 cells. Sci Rep (2026). https://doi.org/10.1038/s41598-026-48333-5

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  • Received: 08 December 2025

  • Accepted: 07 April 2026

  • Published: 25 April 2026

  • DOI: https://doi.org/10.1038/s41598-026-48333-5

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Keywords

  • Schima wallichii (DC.) Korth
  • Kaempferol-3-O-rhamnoside
  • Hepatocellular carcinoma
  • Apoptosis induction
  • Molecular docking
  • Molecular dynamics simulation
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