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Molecular epidemiological characteristics of carbapenem-resistant Enterobacter cloacae complex
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  • Published: 29 May 2026

Molecular epidemiological characteristics of carbapenem-resistant Enterobacter cloacae complex

  • Jing He1 na1,
  • Kuo Cheng2 na1,
  • Qian Sui1,
  • Junhua Feng1,
  • Xiaoyu Zhang1,
  • Kaixuan Zhao1,
  • Wei Wang1 &
  • …
  • Yanli Deng1 

Scientific Reports (2026) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Antimicrobial resistance
  • Clinical microbiology
  • Policy and public health in microbiology

Abstract

This study aimed to monitor the evolving antibiotic resistance patterns of carbapenem-resistant Enterobacter cloacae complex (CR-ECC) at the Fourth Hospital of Hebei Medical University, characterize the molecular epidemiology through resistance gene profiling and phylogenetic analysis, investigate virulence gene profiles, and establish an evidence-based framework for optimizing clinical antimicrobial therapy and infection control strategies. 32 CR-ECC isolates (2018–2022) underwent Vitek-based identification and susceptibility testing. Carbapenemase production was confirmed by mCIM, with whole-genome sequencing (Illumina) for MLST phylogeny (MEGA/iTOL). Plasmid replicons and resistance/virulence genes were analyzed using PlasmidFinder and RGI/BLAST respectively. CR-ECC emerged in 2020, reaching 32 cases by 2022 as the third most prevalent carbapenem-resistant Enterobacteriaceae. Isolates mainly from sputum (43.75%, 14/32) and blood (25.00%, 8/32), with 53.13% ICU origins. Universal resistance to piperacillin/tazobactam, ceftazidime, imipenem; full susceptibility to tigecycline/colistin. Molecular analysis identified 8 STs, predominantly ST171 (56.25%) carrying blaNDM-1/OXA-1. Plasmid analysis revealed Col(pHAD28)/IncC dominance with ST-specific distribution. Virulence genes showed near-universal fimA/csgD/entB (96.88%) and mrkD (90.63%). These findings highlight the therapeutic potential of tigecycline, colistin, and amikacin against CR-ECC, while emphasizing strain-specific aztreonam susceptibility in metallo-β-lactamase producers.

Acknowledgements

We thank Professor Jinyan Zhang for her contribution to the study design of this paper.

Funding

This research was funded by Medical Science Research Project of Hebei (Grant Number 20241387) and S&T Program of Hebei (Grant Number 22377791D).

Author information

Author notes
  1. Jing He and Kuo Cheng have contributed equally to this work.

Authors and Affiliations

  1. Department of Clinical Laboratory, Fourth Hospital of Hebei Medical University, Shijiazhuang, China

    Jing He, Qian Sui, Junhua Feng, Xiaoyu Zhang, Kaixuan Zhao, Wei Wang & Yanli Deng

  2. Department of Clinical Laboratory, Xingtai People’s Hospital, Xingtai, China

    Kuo Cheng

Authors
  1. Jing He
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  2. Kuo Cheng
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  3. Qian Sui
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  4. Junhua Feng
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  5. Xiaoyu Zhang
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  6. Kaixuan Zhao
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  7. Wei Wang
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  8. Yanli Deng
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Corresponding author

Correspondence to Yanli Deng.

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Competing interests

The authors declare no competing interests.

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Cite this article

He, J., Cheng, K., Sui, Q. et al. Molecular epidemiological characteristics of carbapenem-resistant Enterobacter cloacae complex. Sci Rep (2026). https://doi.org/10.1038/s41598-026-55757-6

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  • Received: 28 May 2025

  • Accepted: 26 May 2026

  • Published: 29 May 2026

  • DOI: https://doi.org/10.1038/s41598-026-55757-6

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Keywords

  • Enterobacter cloacae complex
  • Carbapenemase
  • Plasmid
  • Virulence gene
  • Epidemiology
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