Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

npj Precision Oncology
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. npj precision oncology
  3. articles
  4. article
Development and validation of a multimodal AI-agent system for prognosis analysis of bladder urothelial carcinoma
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 14 April 2026

Development and validation of a multimodal AI-agent system for prognosis analysis of bladder urothelial carcinoma

  • Quanhao He1,
  • Hao Tan1,
  • Bangxin Xiao1,
  • Xiang Peng1,
  • Canjie Peng1,
  • Yiwen Tan2,
  • YingJia Liu3,
  • Youde Cao4,5,6,
  • Fa Jin Lv7,
  • Wenlong Zhao8,9,
  • Xiaofeng Yue10,
  • Weiyang He1 &
  • …
  • Mingzhao Xiao1 

npj Precision Oncology (2026) Cite this article

  • 2586 Accesses

  • 2 Altmetric

  • Metrics details

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biomarkers
  • Cancer
  • Computational biology and bioinformatics
  • Oncology

Abstract

Precise survival risk stratification for bladder urothelial carcinoma (BUC) remains a clinical challenge. We developed and validated a multimodal AI agent that integrates textual, radiographic, and pathological data from 1185 patients across four medical centers to predict survival risk. The agent employs LLMs to standardize pathology reports, interactive deep learning networks for precise CT image segmentation, and extracts features from CT scans and whole slide images using CTVisionNet and MacroVisionNet. The multimodal fusion framework, MATCH-Net, integrates these features with microscopic pathology information and clinical text embeddings using a multi-head attention mechanism to generate a comprehensive prognostic score. In multi-center validation, MATCH-Net demonstrated robust performance (C-index ranging from 0.836 to 0.874) and effectively stratified patients into high- and low-risk groups, identifying potential candidates responsive to adjuvant chemotherapy. Furthermore, the framework enabled the quantification of novel, interpretable prognostic biomarkers and provides a reliable and clinically applicable solution for personalized BUC prognosis.

Similar content being viewed by others

Prior knowledge-guided multimodal deep learning system for biomarker exploration and prognosis prediction of urothelial carcinoma

Article Open access 26 December 2025

A multi-modal approach for decision making in bladder cancer

Article 14 January 2026

Integrated multicenter deep learning system for prognostic prediction in bladder cancer

Article Open access 16 October 2024

Data availability

The WSIs, nephrographic CT scans, and annotation data used for both the training and validation sets are subject to institutional restrictions. Due to patient privacy obligations and Institutional Review Board (IRB) approvals, these data are not publicly available. However, they can be accessed upon reasonable request from the corresponding author, pending approval from the IRBs and legal departments of all participating centers.

Code availability

The source code is available online (https://github.com/hqh1997/MMS_AI_agent).

References

  1. Nadal, R., Valderrama, B. P. & Bellmunt, J. Progress in systemic therapy for advanced-stage urothelial carcinoma. Nat. Rev. Clin. Oncol. 21, 8–27 (2024).

    Google Scholar 

  2. Hemenway, G. et al. Advancements in Urothelial Cancer Care: Optimizing Treatment for Your Patient. Am. Soc. Clin. Oncol. Educ. Book 44, e432054 (2024).

    Google Scholar 

  3. Lopez-Beltran, A., Cookson, M. S., Guercio, B. J. & Cheng, L. Advances in diagnosis and treatment of bladder cancer. BMJ 384, e076743 (2024).

    Google Scholar 

  4. Soualhi, A. et al. The incidence and prevalence of upper tract urothelial carcinoma: a systematic review. BMC Urol. 21, 110 (2021).

    Google Scholar 

  5. Compérat, E. et al. Current best practice for bladder cancer: a narrative review of diagnostics and treatments. Lancet 400, 1712–1721 (2022).

    Google Scholar 

  6. Shen, J., Li, Z., Wang, R., Ding, G. & Zhang, Y. Bladder cancer diagnostic and prognostic models from DNA methylation by multi algorithm machine learning. NPJ Precis. Oncol. https://doi.org/10.1038/s41698-025-01195-y (2025).

  7. Raman, S. P. & Fishman, E. K. Bladder malignancies on CT: the underrated role of CT in diagnosis. AJR Am. J. Roentgenol. 203, 347–354 (2014).

  8. Compérat, E. et al. Updated pathology reporting standards for bladder cancer: biopsies, transurethral resections and radical cystectomies. World J. Urol. 40, 915–927 (2022).

    Google Scholar 

  9. Perez-Lopez, R., Ghaffari Laleh, N., Mahmood, F. & Kather, J. N. A guide to artificial intelligence for cancer researchers. Nat. Rev. Cancer https://doi.org/10.1038/s41568-024-00694-7 (2024).

  10. McGenity, C. et al. Artificial intelligence in digital pathology: a systematic review and meta-analysis of diagnostic test accuracy. npj Dig. Med. 7, 114 (2024).

    Google Scholar 

  11. He, J. et al. Development of a deep learning model for T1N0 gastric cancer diagnosis using 2.5D radiomic data in preoperative CT images. NPJ Precis. Oncol. 9, 249 (2025).

    Google Scholar 

  12. Isensee, F., Jaeger, P. F., Kohl, S. A. A., Petersen, J. & Maier-Hein, K. H. nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nat. Methods 18, 203–211 (2021).

    Google Scholar 

  13. Çiçek, Ö., Abdulkadir, A., Lienkamp, S. S., Brox, T. & Ronneberger, O. in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016 (eds Sebastien Ourselin et al) 424–432 (Springer International Publishing, 2016).

  14. Shao, Z. TransMIL: transformer based correlated multiple instance learning for whole slide image classification. In Proc. 35th International Conference on Neural Information Processing Systems 2136–2147 (ACM, 2021).

  15. Chen, R. J. et al. in Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part VIII 24. 339–349 (Springer, 2021).

  16. Saldanha, O. L. et al. Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology. NPJ Precis. Oncol. 7, 35 (2023).

    Google Scholar 

  17. Lu, M. Y. et al. A visual-language foundation model for computational pathology. Nat. Med. 30, 863–874 (2024).

    Google Scholar 

  18. Chen, R. J. et al. Towards a general-purpose foundation model for computational pathology. Nat. Med. 30, 850–862 (2024).

    Google Scholar 

  19. Yuan, Y. et al. Cell graph analysis in hepatocellular carcinoma: predicting local recurrence and identifying spatial relationship biomarkers. NPJ Precis. Oncol. 9, 261 (2025).

    Google Scholar 

  20. Pisula, J. I. et al. Explainable, federated deep learning model predicts disease progression risk of cutaneous squamous cell carcinoma. NPJ Precis. Oncol. 9, 205 (2025).

    Google Scholar 

  21. Lu, M. Y. et al. Data-efficient and weakly supervised computational pathology on whole-slide images. Nat. Biomed. Eng. 5, 555–570 (2021).

    Google Scholar 

  22. Chen, R. J. et al. Pan-cancer integrative histology-genomic analysis via multimodal deep learning. Cancer Cell 40, 865–878.e866 (2022).

    Google Scholar 

  23. Wang, G. et al. DeepIGeoS: a deep interactive geodesic framework for medical image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 41, 1559–1572 (2018).

  24. Luo, X. et al. MIDeepSeg: minimally interactive segmentation of unseen objects from medical images using deep learning. Med. Image Anal. 72, 102102 (2021).

  25. Liang, J. et al. Deep learning supported discovery of biomarkers for clinical prognosis of liver cancer. Nat. Mach. Intell. 5, 408–420 (2023).

    Google Scholar 

  26. He, Q. et al. Integrated multicenter deep learning system for prognostic prediction in bladder cancer. NPJ Precis. Oncol. 8, 233 (2024).

    Google Scholar 

  27. Lee, Y., Ferber, D., Rood, J. E., Regev, A. & Kather, J. N. How AI agents will change cancer research and oncology. Nat. Cancer 5, 1765–1767 (2024).

    Google Scholar 

  28. Ferber, D. et al. Development and validation of an autonomous artificial intelligence agent for clinical decision-making in oncology. Nat. Cancer https://doi.org/10.1038/s43018-025-00991-6 (2025).

  29. Liu, X. et al. A generalist medical language model for disease diagnosis assistance. Nat. Med. 31, 932–942 (2019).

    Google Scholar 

  30. Selvaraju, R. R. et al. Grad-CAM: visual explanations from deep networks via gradient-based localization. Int. J. Comput. Vision 128, 336–359 (2020).

  31. Suzuki, H. et al. Exploring drug resistance via intercellular crosstalk using spatial transcriptomics in high-grade serous ovarian carcinoma. NPJ Precis. Oncol. 9, 345 (2025).

    Google Scholar 

  32. Li, T. et al. Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data. NPJ Precis. Oncol. 9, 310 (2025).

    Google Scholar 

  33. Hatamizadeh, A. et al. in International MICCAI brainlesion workshop. 272–284 (Springer).

  34. Kirillov, A. et al. Segment anything. in Proc. IEEE/CVF International Conference on Computer Vision 4015–4026 (IEEE, 2023).

  35. Xie, S., Girshick, R., Dollár, P., Tu, Z. & He, K. Aggregated residual transformations for deep neural networks. in Proc. 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 5987–5995 (IEEE, 2017).

  36. Ganesan, K. ROUGE 2.0: Updated and Improved Measures for Evaluation of Summarization Tasks. Preprint at https://arxiv.org/abs/1803.01937 (2018).

  37. Zhang, T. et al. BERTScore: Evaluating text generation with BERT. Int. Conf. Learn. Represent. (2020).

  38. Chen, R. J. et al. in Proc. IEEE/CVF International Conference on Computer Vision (ICCV) 3995–4005 (IEEE, 2021).

  39. Chen, R. J. et al. Pathomic fusion: an integrated framework for fusing histopathology and genomic features for cancer diagnosis and prognosis. IEEE Trans. Med. Imaging 41, 757–770 (2022).

    Google Scholar 

  40. Kokhlikyan, N. et al. Captum: a unified and generic model interpretability library for PyTorch. Preprint at https://doi.org/10.48550/arXiv.2009.07896 (2020).

  41. Zadeh, S. G. & Schmid, M. Bias in cross-entropy-based training of deep survival networks. IEEE Trans. Pattern Anal. Mach. Intell. 43, 3126–3137 (2021).

Download references

Acknowledgements

We acknowledge the support from the Medical Health Care Ecosystem Innovation Team of the First Affiliated Hospital of Chongqing Medical University (CYYY-DSTDXM-202409), the Postgraduate Education Reform Project of the First Affiliated Hospital of Chongqing Medical University (jgxm-202501), and the Chongqing Municipal Education Commission's 14th 5-year key discipline Support Project (No. 20240101). We thank all pathologists, radiologists, and related staff at the participating institutions for their assistance in data collection. Computing work was partly supported by the Supercomputing Center of Chongqing Medical University.

Author information

Authors and Affiliations

  1. Department of Urology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China

    Quanhao He, Hao Tan, Bangxin Xiao, Xiang Peng, Canjie Peng, Weiyang He & Mingzhao Xiao

  2. Department of Pathology, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China

    Yiwen Tan

  3. Department of Pathology, Yongchuan Hospital of Chongqing Medical University, Chongqing, China

    YingJia Liu

  4. Department of Pathology, College of Basic Medicine, Chongqing Medical University, Chongqing, China

    Youde Cao

  5. Department of Clinical Pathololgy Laboratory of Pathology Diagnostic Center, Chongqing Medical University, Chongqing, China

    Youde Cao

  6. Molecular Medicine Diagnostic and Testing Center, Chongqing Medical University, Chongqing, China

    Youde Cao

  7. Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China

    Fa Jin Lv

  8. College of Artificial Intelligence Medicine, Chongqing Medical University, Chongqing, China

    Wenlong Zhao

  9. College of Biomedical Engineering, Chongqing Medical University, Chongqing, China

    Wenlong Zhao

  10. Department of Urology, The Third Affiliated Hospital of Chongqing Medical University, Chongqing, China

    Xiaofeng Yue

Authors
  1. Quanhao He
    View author publications

    Search author on:PubMed Google Scholar

  2. Hao Tan
    View author publications

    Search author on:PubMed Google Scholar

  3. Bangxin Xiao
    View author publications

    Search author on:PubMed Google Scholar

  4. Xiang Peng
    View author publications

    Search author on:PubMed Google Scholar

  5. Canjie Peng
    View author publications

    Search author on:PubMed Google Scholar

  6. Yiwen Tan
    View author publications

    Search author on:PubMed Google Scholar

  7. YingJia Liu
    View author publications

    Search author on:PubMed Google Scholar

  8. Youde Cao
    View author publications

    Search author on:PubMed Google Scholar

  9. Fa Jin Lv
    View author publications

    Search author on:PubMed Google Scholar

  10. Wenlong Zhao
    View author publications

    Search author on:PubMed Google Scholar

  11. Xiaofeng Yue
    View author publications

    Search author on:PubMed Google Scholar

  12. Weiyang He
    View author publications

    Search author on:PubMed Google Scholar

  13. Mingzhao Xiao
    View author publications

    Search author on:PubMed Google Scholar

Contributions

Q.H.H., H.T., B.X.X., Y.W.T., X.P., W.Y.H., and M.Z.X. conceived and designed the study; H.T., C.J.P., X.F.Y., X.P., and X.Z. collected the data. Q.H.H., H.T., and C.J.P. evaluated images. Y.J.L., Y.W.T., and D.Y.C. labeled the pathological slide images. F.J.L. supervised and annotated the radiographic images. Q.H.H., W.L.Z., and X.P. trained and developed the AI system. Q.H.H., B.X.X., and Y.W.T. analyzed and interpreted the data and wrote the original draft of the manuscript. Q.H.H. and X.F.Y. were responsible for revising the manuscript and performing supplementary experiments. W.L.Z., X.F.Y., W.Y.H., and M.Z.X. supervised and directed the study.

Corresponding authors

Correspondence to Wenlong Zhao, Xiaofeng Yue, Weiyang He or Mingzhao Xiao.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

supplementary_cleaned_version (download PDF )

supplementary_media (download MP4 )

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

He, Q., Tan, H., Xiao, B. et al. Development and validation of a multimodal AI-agent system for prognosis analysis of bladder urothelial carcinoma. npj Precis. Onc. (2026). https://doi.org/10.1038/s41698-026-01415-z

Download citation

  • Received: 20 August 2025

  • Accepted: 31 March 2026

  • Published: 14 April 2026

  • DOI: https://doi.org/10.1038/s41698-026-01415-z

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Download PDF

Associated content

Collection

AI agents in oncology

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Aims & Scope
  • Content types
  • Journal Information
  • Open Access
  • About the Editors
  • Contact
  • Calls for Papers
  • Editorial policies
  • Journal Metrics
  • About the Partner

Publish with us

  • For Authors and Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

npj Precision Oncology (npj Precis. Onc.)

ISSN 2397-768X (online)

nature.com footer links

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing: Cancer

Sign up for the Nature Briefing: Cancer newsletter — what matters in cancer research, free to your inbox weekly.

Get what matters in cancer research, free to your inbox weekly. Sign up for Nature Briefing: Cancer