Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

npj Digital Medicine
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. npj digital medicine
  3. articles
  4. article
Real-time reconstruction of 3D bone models via very-low-dose protocols
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 17 March 2026

Real-time reconstruction of 3D bone models via very-low-dose protocols

  • Yiqun Lin1 na1,
  • Haoran Sun2 na1,
  • Yongqing Li3,
  • Rabia Aslam2,
  • Lung Fung Tse4,
  • Tiange Cheng5,
  • Chun Sing Chui6,
  • Wing Fung Yau2,
  • Victorine R. Le Meur2,
  • Meruyert Amangeldy2,
  • Kiho Cho5,
  • Yinyu Ye7,8,
  • James Zou9,
  • Wei Zhao3,10,11 &
  • …
  • Xiaomeng Li1 

npj Digital Medicine , Article number:  (2026) Cite this article

  • 1280 Accesses

  • Metrics details

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Bone imaging
  • Radiography
  • Three-dimensional imaging
  • Tomography

Abstract

Patient-specific bone models are essential for designing surgical guides and preoperative planning, as they enable the visualization of intricate anatomical structures. However, traditional CT-based approaches for creating bone models are limited to preoperative use due to the low flexibility and high radiation exposure of CT and time-consuming manual delineation. Here, we introduce Semi-Supervised Reconstruction with Knowledge Distillation (SSR-KD), a fast and accurate AI framework to reconstruct high-quality bone models from biplanar X-rays in 30 seconds, with an average error under 1.0 mm, eliminating the dependence on CT and manual work. Additionally, high tibial osteotomy simulation was performed by experts on reconstructed bone models, demonstrating that bone models reconstructed from biplanar X-rays have comparable clinical applicability to those annotated from CT. Overall, our approach accelerates the process, reduces radiation exposure, enables intraoperative guidance, and significantly improves the practicality of bone models, offering transformative applications in orthopedics.

Similar content being viewed by others

Adversarial robustness improvement for X-ray bone segmentation using synthetic data created from computed tomography scans

Article Open access 28 October 2024

Application of a customized 3D-printed osteotomy guide plate for tibial transverse transport

Article Open access 01 October 2024

Segmentation of the iliac crest from CT-data for virtual surgical planning of facial reconstruction surgery using deep learning

Article Open access 07 January 2025

Data availability

The datasets generated and/or analyzed during the current study are not publicly available because this would compromise the patient confidentiality and privacy agreement with the data-providing hospitals, which prohibits any form of public distribution. The minimal dataset that would be necessary to interpret, replicate, and build upon the findings reported in the article is available from the corresponding authors upon reasonable request.

Code availability

The source code for this study is publicly available on GitHub at https://github.com/xmed-lab/SSR-KD, including the source code for implementing the SSR-KD framework, data generation, and experimental analysis. The code is released under the MIT license. We implemented the network design, model training, and model evaluation using PyTorch56. Key dependencies include TIGRE for X-ray projection simulation and PyTorch3D for calculating the chamfer distance. Other significant libraries used are Open3D, NumPy, Trimesh, skimage, and SimpleITK. The released codebase was tested on a workstation equipped with two NVIDIA GeForce RTX 3090 GPUs (24 GB), Intel Xeon Gold 5218 CPU @ 2.30 GHz, and 128 GB of RAM.

References

  1. Global orthopedic surgery market report. https://www.globenewswire.com/news-release/2019/08/13/1901268/0/en/Global-Orthopedic-Surgery-Market-Report-2017-to-2022-Procedure-Volume-Trends-by-Type-Country-and-Region.html. Accessed 11 May 2023.

  2. Globaldata. https://www.globaldata.com/store/report/usa-orthopedic-procedures-analysis/. Accessed 11 May 2023.

  3. Li, Y.-T. et al. Surgical treatment for posterior dislocation of hip combined with acetabular fractures using preoperative virtual simulation and three-dimensional printing model-assisted precontoured plate fixation techniques. BioMed. Res. Int. 2019, 3971571 (2019).

  4. Woo, S.-H., Sung, M.-J., Park, K.-S. & Yoon, T.-R. Three-dimensional-printing technology in hip and pelvic surgery: current landscape. Hip Pelvis 32, 1–10 (2020).

    Google Scholar 

  5. Portnoy, Y. et al. Three-dimensional technologies in presurgical planning of bone surgeries: current evidence and future perspectives. Int. J. Surg. 109, 3–10 (2023).

    Google Scholar 

  6. Kumar, V., Baburaj, V., Patel, S., Sharma, S. & Vaishya, R. Does the use of intraoperative ct scan improve outcomes in orthopaedic surgery? a systematic review and meta-analysis of 871 cases. J. Clin. Orthop. Trauma 18, 216–223 (2021).

    Google Scholar 

  7. Villarraga-Gómez, H. & Smith, S. T. Effect of the number of projections on dimensional measurements with X-ray computed tomography. Precis. Eng. 66, 445–456 (2020).

    Google Scholar 

  8. Brenner, D. J. & Hall, E. J. Computed tomography—an increasing source of radiation exposure. N. Engl. J. Med. 357, 2277–2284 (2007).

    Google Scholar 

  9. Miglioretti, D. L. et al. The use of computed tomography in pediatrics and the associated radiation exposure and estimated cancer risk. JAMA Pediatr. 167, 700–707 (2013).

    Google Scholar 

  10. Pearce, M. S. et al. Radiation exposure from ct scans in childhood and subsequent risk of leukaemia and brain tumours: a retrospective cohort study. Lancet 380, 499–505 (2012).

    Google Scholar 

  11. Lee, C. I., Haims, A. H., Monico, E. P., Brink, J. A. & Forman, H. P. Diagnostic ct scans: assessment of patient, physician, and radiologist awareness of radiation dose and possible risks. Radiology 231, 393–398 (2004).

    Google Scholar 

  12. Patil, S., Lindley, E. M., Burger, E. L., Yoshihara, H. & Patel, V. V. Pedicle screw placement with O-arm and Stealth navigation. Orthopedics 35, e61–e65 (2012).

    Google Scholar 

  13. Sari, R., Baskan, O., Ozlu, E. B. K. & Elmaci, I. Reduced radiation exposure during o-arm navigation in degenerative lumbar spine surgery. Demiroglu Bilim Univ. Florence Nightingale Tip. Derg. 10, 063–070 (2024).

    Google Scholar 

  14. Sarkalkan, N., Weinans, H. & Zadpoor, A. A. Statistical shape and appearance models of bones. Bone 60, 129–140 (2014).

    Google Scholar 

  15. Baka, N. et al. Statistical shape model-based femur kinematics from biplane fluoroscopy. IEEE Trans. Med. Imaging 31, 1573–1583 (2012).

    Google Scholar 

  16. Zheng, G. et al. A 2d/3d correspondence building method for reconstruction of a patient-specific 3d bone surface model using point distribution models and calibrated X-ray images. Med. Image Anal. 13, 883–899 (2009).

    Google Scholar 

  17. Thusini, X. O. et al. Uncertainty reduction in contour-based 3d/2d registration of bone surfaces. In Proc. Shape in Medical Imaging: International Workshop, ShapeMI 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020 18–29 (Springer, 2020).

  18. Lamecker, H., Wenckebach, T. H. & Hege, H.-C. Atlas-based 3d-shape reconstruction from X-ray images. In Proc. 18th International Conference on Pattern Recognition (ICPR’06) Vol. 1, 371–374 (IEEE, 2006).

  19. Klima, O., Kleparnik, P., Spanel, M. & Zemcik, P. Intensity-based femoral atlas 2D/3D registration using Levenberg-Marquardt optimisation. In Proc. Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging Vol. 9788, 113–124 (SPIE, 2016).

  20. Ehlke, M., Ramm, H., Lamecker, H., Hege, H.-C. & Zachow, S. Fast generation of virtual X-ray images for reconstruction of 3D anatomy. IEEE Trans. Vis. Comput. Graph. 19, 2673–2682 (2013).

    Google Scholar 

  21. Zheng, G. Personalized X-ray reconstruction of the proximal femur via intensity-based non-rigid 2D-3D registration. In Proc. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2011: 14th International Conference, Toronto, Canada, September 18-22, 2011, Part II 14 598–606 (Springer, 2011).

  22. Sadowsky, O., Chintalapani, G. & Taylor, R. H. Deformable 2D-3D registration of the pelvis with a limited field of view, using shape statistics. In Proc. Medical Image Computing and Computer-Assisted Intervention–MICCAI 2007: 10th International Conference, Brisbane, Australia, October 29-November 2, 2007, Part II 10 519–526 (Springer, 2007).

  23. Yao, J. et al. Assessing accuracy factors in deformable 2D/3D medical image registration using a statistical pelvis model. In Proc. Ninth IEEE International Conference on Computer Vision 1329–1334 (IEEE, 2003).

  24. Yu, P. et al. Spatial resolution enhancement using deep learning improves chest disease diagnosis based on thick slice ct. npj Digit. Med. 7, 335 (2024).

    Google Scholar 

  25. Bellemo, V. et al. Optical coherence tomography choroidal enhancement using generative deep learning. npj Digit. Med. 7, 115 (2024).

    Google Scholar 

  26. Chen, R. et al. Translating color fundus photography to indocyanine green angiography using deep-learning for age-related macular degeneration screening. npj Digit. Med. 7, 34 (2024).

    Google Scholar 

  27. Čavojská, J. et al. Estimating and abstracting the 3d structure of feline bones using neural networks on X-ray (2D) images. Commun. Biol. 3, 337 (2020).

    Google Scholar 

  28. Jiang, B. et al. Deep learning reconstruction shows better lung nodule detection for ultra-low-dose chest CT. Radiology 303, 202–212 (2022).

    Google Scholar 

  29. Preetha, C. J. et al. Deep-learning-based synthesis of post-contrast T1-weighted MRI for tumour response assessment in neuro-oncology: a multicentre, retrospective cohort study. Lancet Digit. Health 3, e784–e794 (2021).

    Google Scholar 

  30. Magdy, O. et al. Bone scintigraphy based on deep learning model and modified growth optimizer. Sci. Rep. 14, 25627 (2024).

    Google Scholar 

  31. Wu, C. et al. A machine learning-based multiscale model to predict bone formation in scaffolds. Nat. Comput. Sci. 1, 532–541 (2021).

    Google Scholar 

  32. Shiode, R. et al. 2d–3d reconstruction of distal forearm bone from actual x-ray images of the wrist using convolutional neural networks. Sci. Rep. 11, 1–12 (2021).

    Google Scholar 

  33. Kasten, Y., Doktofsky, D. & Kovler, I. End-to-end convolutional neural network for 3D reconstruction of knee bones from bi-planar X-ray images. In Proc. International Workshop on Machine Learning for Medical Image Reconstruction 123–133 (Springer, 2020).

  34. Aubert, B., Vazquez, C., Cresson, T., Parent, S. & de Guise, J. A. Toward automated 3D spine reconstruction from biplanar radiographs using CNN for statistical spine model fitting. IEEE Trans. Med. Imaging 38, 2796–2806 (2019).

    Google Scholar 

  35. Kim, H., Lee, K., Lee, D. & Baek, N. 3D reconstruction of leg bones from X-ray images using CNN-based feature analysis. In Proc. 2019 International Conference on Information and Communication Technology Convergence (ICTC) 669–672 (IEEE, 2019).

  36. Park, J. J., Florence, P., Straub, J., Newcombe, R. & Lovegrove, S. Deepsdf: Learning continuous signed distance functions for shape representation. In Proc. IEEE/CVF Conference on Computer Vision and Pattern Recognition 165–174 (IEEE, 2019).

  37. Mescheder, L., Oechsle, M., Niemeyer, M., Nowozin, S. & Geiger, A. Occupancy networks: learning 3D reconstruction in function space. In Proc. IEEE/CVF Conference on Computer Vision and Pattern Recognition 4460–4470 (IEEE, 2019).

  38. Lorensen, W. E. & Cline, H. E. Marching cubes: a high resolution 3D surface construction algorithm. In Proc. ACM SIGGRAPH Computer Graphics Vol. 21, 163–169 (ACM, 1987).

  39. Shen, L., Zhao, W. & Xing, L. Patient-specific reconstruction of volumetric computed tomography images from a single projection view via deep learning. Nat. Biomed. Eng. 3, 880–888 (2019).

    Google Scholar 

  40. Reyneke, C. J. F. et al. Review of 2-d/3-d reconstruction using statistical shape and intensity models and x-ray image synthesis: toward a unified framework. IEEE Rev. Biomed. Eng. 12, 269–286 (2018).

    Google Scholar 

  41. Chênes, C. & Schmid, J. Revisiting contour-driven and knowledge-based deformable models: application to 2D-3D proximal femur reconstruction from X-ray images. In Proc. International Conference on Medical Image Computing and Computer-Assisted Intervention 451–460 (Springer, 2021).

  42. Wright, J. M., Crockett, H. C., Slawski, D. P., Madsen, M. W. & Windsor, R. E. High tibial osteotomy. J. Am. Acad. Orthop. Surg. 13, 279–289 (2005).

    Google Scholar 

  43. McNamara, I., Birmingham, T., Fowler, P. & Giffin, J. High tibial osteotomy: evolution of research and clinical applications—a Canadian experience. Knee Surg. Sports Traumatol. Arthrosc. 21, 23–31 (2013).

    Google Scholar 

  44. Fayard, J.-M. et al. Patient-specific cutting guides increase accuracy of medial opening wedge high tibial osteotomy procedure: a retrospective case-control study. J. Exp. Orthop. 11, e12013 (2024).

    Google Scholar 

  45. Yam, M. G. J., Chao, J. Y. Y., Leong, C. & Tan, C. H. 3D printed patient specific customised surgical jig for reverse shoulder arthroplasty, a cost effective and accurate solution. J. Clin. Orthop. Trauma 21, 101503 (2021).

    Google Scholar 

  46. Materialise 3-matic. https://www.materialise.com/en/industrial/software/3-matic. Accessed 10 September 2024.

  47. Khan, F. A., Lipman, J. D., Pearle, A. D., Boland, P. J. & Healey, J. H. Surgical technique: computer-generated custom jigs improve accuracy of wide resection of bone tumors. Clin. Orthop. Relat. Res. 471, 2007–2016 (2013).

    Google Scholar 

  48. Rau, T. S. et al. Concept description and accuracy evaluation of a moldable surgical targeting system. J. Med. Imaging 8, 015003–015003 (2021).

    Google Scholar 

  49. Geiger, L., Zuniga, M. G., Lenarz, T., Majdani, O. & Rau, T. S. Drilling accuracy evaluation of a mouldable surgical targeting system for minimally invasive access to anatomic targets in the temporal bone. Eur. Arch. Oto-Rhino-Laryngol. 280, 4371–4379 (2023).

    Google Scholar 

  50. Yeung, M., Abdulmajeed, A., Carrico, C. K., Deeb, G. R. & Bencharit, S. Accuracy and precision of 3D-printed implant surgical guides with different implant systems: an in vitro study. J. Prosthet. Dent. 123, 821–828 (2020).

    Google Scholar 

  51. Msallem, B. et al. Dimensional accuracy in 3D printed medical models: a follow-up study on SLA and SLS technology. J. Clin. Med. 13, 5848 (2024).

    Google Scholar 

  52. Caiti, G., Dobbe, J. G., Strijkers, G. J., Strackee, S. D. & Streekstra, G. J. Positioning error of custom 3D-printed surgical guides for the radius: influence of fitting location and guide design. Int. J. Comput. Assist. Radiol. Surg. 13, 507–518 (2018).

    Google Scholar 

  53. Milletari, F., Navab, N. & Ahmadi, S.-A. V-net: Fully convolutional neural networks for volumetric medical image segmentation. In Proc. 2016 Fourth International Conference on 3D Vision (3DV) 565–571 (IEEE, 2016).

  54. Newell, A., Yang, K. & Deng, J. Stacked hourglass networks for human pose estimation. In Proc. European Conference on Computer Vision 483–499 (Springer, 2016).

  55. Ronneberger, O., Fischer, P. & Brox, T. U-net: Convolutional networks for biomedical image segmentation. In Proc. International Conference on Medical Image Computing and Computer-assisted Intervention 234–241 (Springer, 2015).

  56. Paszke, A. et al. PyTorch: an imperative style, high-performance deep learning library. In Proc. Advances in Neural Information Processing Systems Vol. 32, 8024–8035 (Curran Associates, Inc., 2019).

Download references

Acknowledgements

This work was supported by a research grant from the Hong Kong Innovation and Technology Fund (Project PRP/041/22FX) and partially supported by the Natural Science Foundation of Zhejiang Province (No. LZ23A050002) and the National Natural Science Foundation of China (No. 12175012 and No. 12575358).

Author information

Author notes
  1. These authors contributed equally: Yiqun Lin, Haoran Sun.

Authors and Affiliations

  1. Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China

    Yiqun Lin & Xiaomeng Li

  2. Koln 3D Technology (Medical) Limited, Hong Kong SAR, China

    Haoran Sun, Rabia Aslam, Wing Fung Yau, Victorine R. Le Meur & Meruyert Amangeldy

  3. Department of Physics, Beihang University, Beijing, China

    Yongqing Li & Wei Zhao

  4. Union Hospital, Hong Kong SAR, China

    Lung Fung Tse

  5. Dental Materials Science, Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China

    Tiange Cheng & Kiho Cho

  6. Department of Orthopaedics and Traumatology, The Chinese University of Hong Kong, Hong Kong SAR, China

    Chun Sing Chui

  7. Department of Management Science and Engineering, Stanford University, Stanford, CA, USA

    Yinyu Ye

  8. Department of Industrial Engineering and Decision Analytics, The Hong Kong University of Science and Technology, Hong Kong SAR, China

    Yinyu Ye

  9. Department of Biomedical Data Science, Stanford University, Stanford, CA, USA

    James Zou

  10. National Key Laboratory of Spintronics, Hangzhou International Innovation Institute, Beihang University, Hangzhou, China

    Wei Zhao

  11. Tianmushan Laboratory, Hangzhou, China

    Wei Zhao

Authors
  1. Yiqun Lin
    View author publications

    Search author on:PubMed Google Scholar

  2. Haoran Sun
    View author publications

    Search author on:PubMed Google Scholar

  3. Yongqing Li
    View author publications

    Search author on:PubMed Google Scholar

  4. Rabia Aslam
    View author publications

    Search author on:PubMed Google Scholar

  5. Lung Fung Tse
    View author publications

    Search author on:PubMed Google Scholar

  6. Tiange Cheng
    View author publications

    Search author on:PubMed Google Scholar

  7. Chun Sing Chui
    View author publications

    Search author on:PubMed Google Scholar

  8. Wing Fung Yau
    View author publications

    Search author on:PubMed Google Scholar

  9. Victorine R. Le Meur
    View author publications

    Search author on:PubMed Google Scholar

  10. Meruyert Amangeldy
    View author publications

    Search author on:PubMed Google Scholar

  11. Kiho Cho
    View author publications

    Search author on:PubMed Google Scholar

  12. Yinyu Ye
    View author publications

    Search author on:PubMed Google Scholar

  13. James Zou
    View author publications

    Search author on:PubMed Google Scholar

  14. Wei Zhao
    View author publications

    Search author on:PubMed Google Scholar

  15. Xiaomeng Li
    View author publications

    Search author on:PubMed Google Scholar

Contributions

X. Li, W. Zhao, Y. Lin, and H. Sun conceptualized and designed the study. Y. Lin implemented the method and contributed to the manuscript writing, revision, and analysis of the results. H. Sun, W. Yau, and M. Amangeldy designed and organized the HTO simulation to evaluate its clinical applicability. Y. Li, R. Aslam, T. Cheng, and V. Le Meur coordinated the data annotation. L. Tse, C. Chui, and K. Cho assessed the annotation quality and provided guidance. Y. Ye and J. Zou developed the manuscript outline and guided its preparation. All authors read and approved the manuscript.

Corresponding authors

Correspondence to Wei Zhao or Xiaomeng Li.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lin, Y., Sun, H., Li, Y. et al. Real-time reconstruction of 3D bone models via very-low-dose protocols. npj Digit. Med. (2026). https://doi.org/10.1038/s41746-026-02389-9

Download citation

  • Received: 12 January 2025

  • Accepted: 18 January 2026

  • Published: 17 March 2026

  • DOI: https://doi.org/10.1038/s41746-026-02389-9

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Download PDF

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Aims and scope
  • Content types
  • Journal Information
  • About the Editors
  • Contact
  • Editorial policies
  • Calls for Papers
  • Journal Metrics
  • About the Partner
  • Open Access
  • Early Career Researcher Editorial Fellowship
  • Editorial Team Vacancies
  • News and Views Student Editor
  • Communication Fellowship

Publish with us

  • For Authors and Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

npj Digital Medicine (npj Digit. Med.)

ISSN 2398-6352 (online)

nature.com footer links

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing