Table 2 Distribution of haplotype-defining variants in the amazon population among indigenous haplogroups

From: Mitochondrial ancestry from complete mitogenomes highlights a lack of characterization of indigenous haplogroups in Brazilian Amazon population

Haplogroup

N

Common Mutations of all Samples

Partially Found Mutations (%)

Missing Mutations (%)

A2

24

73G 146C 235G 263G 663G 750G 1438G 2706G 4769G 11719A 12007A 12705T 15326G 16223T 16290T 16319A 16362C

8860G (95.83) 4248C (95.83)

4824G (95.83) 14766T (95.83)

8794T (91.67) 64T (83.33)

153G (87.5) 152C! (70.83)

1736G (66.67) 8027A (41.67)

16111T (37.5)  16111T! (29.17)

152C (29.17) 15074C (20.83)

9377G (20.83)  7028T (16.67)

16213A (4.17)  8772C (4.17)

16189C (4.17)

152C! (29.17) 153G (12.5)

4248C (4.17) 4824G (4.17)

7028T (83.33) 8027A (58.33)

8794T (8.33) 8860G (4.17)

14766T (4.17) 1736G (33.33)

16111T (62.5)

A8

1

64T 73G 146C 235G 263G 663G 750G 1438G 2706G 4248C 4769G 4824G 8794T 8860G 11719A 12705T 14766T 15326G 16223T 16290T 16319A

 

1736G 7028T 16242T

B2

21

73G 263G 499A 750G 827G 1438G 2706G 4769G 4820A 4977C 9950C 11177T 11719A 14766T 15326G 16217C 8281d – 8289d

16189C (95.24) 8860G (95.24) 

6473T (95.24) 13590A (80.95) 

3547G (66.67) 6119T (47.62) 

14049T (38.10) 7028T (28.57) 

16468C (9.52) 16092C (4.76)

3547G (33.33) 6473T (4.76)

7028T (71.43) 8860G (4.76)

13590A (19.05) 14049T (9.52)

15535T (100) 16189C (4.76)

B4

1

73G 146C 263G 750G 1438G 1473T 2706G 3423A 4769G 6719C 8860G 9123A 10238C 11719A 12239T 14022G 14766T 15326G 15746G 16189C 16217C 16247G 16261T 8281d – 8289d

 

5465C 7028T

C

34

73G 263G 489C 750G 1438G 2706G 3552A 4715G 4769G 8584A 8701G 8860G 9540C 9545G 10398G 10400T 11719A 11914A 12705T 14766T 14783C 15043A 15301A 15326G 15487T 16223T 16298C

16327T (97.06) 14318C (97.06) 

7196A (94.12) 13263G (91.18) 

10873C (85.29) 7028T (11.76) 

7028T (88.24) 7196A (5.88)

10873C (14.71) 1438G (2.94)

13263G (8.82) 14318C (2.94)

16327T (2.94)

C1

10

73G 489C 750G 1438G 2706G 3552A 4715G 4769G 8701G 8860G 9540C 9545G 10398G 10400T 11719A 11914A 12705T 14318C 14766T 15043A 15301A 15326G 15487T 16223T 16298C 16325C 16327T

10873C (90) 13263G (90) 

14783C (90) 7196A (90) 

8584A (90) 263G (70)

16051G (40) 194T (40) 

7697A (40) 263G! (30) 

15930A (30) 12454A (30) 

1888A (30) 4242T (30) 

493G (30) 7013A (30) 

9557T (20) 214G (10)

7028T (10)

7028T (90) 7196A (10)

8584A (10) 9557T (10)

10873C (10) 13263G (10)

14783C (10) 16274A (10)

D1

7

73G 263G 489C 750G 1438G 2706G 3010A 4769G 4883T 5178A 8414T 8701G 8860G 10398G 10400T 11719A 12705T 14668T 14766T 14783C 15043A 15301A 15326G 16223T 16325C 16362C 

10873C (85.71) 2092T (85.71)

9540C (85.71) 16142T (14.29) 

7028T (14.29)

2092T (14.29) 7028T (85.71)

9540C (14.29) 10873C (14.29)

D4

4

73G 263G 489C 750G 1438G 2706G 3010A 4769G 4883T 5178A 8414T 8701G 8860G 9540C 10398G 10400T 10873C 11719A 12705T 14668T 14766T 14783C 15043A 15301A 15326G 16223T 16362C

15106A (25) 195C (25)

195C (75) 198T (100)

7028T (100)

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