Fig. 1: Assembly and key characterization of the A.danfengensis T2T genome, including centromeric characterization, symbiotic Wolbachia and mitochondrial DNA. | Communications Biology

Fig. 1: Assembly and key characterization of the A.danfengensis T2T genome, including centromeric characterization, symbiotic Wolbachia and mitochondrial DNA.

From: Telomere-to-telomere genome assembly uncovers Wolbachia-driven recurrent male bottleneck effect and selection in a sawfly

Fig. 1

a Genome-wide Hi-C contact matrix of A.danfengensis. Red color intensity in the heatmap shows frequency of interaction between two loci at 25 kb resolution. b Distribution of genomic features of the A.danfengensis genome. Tracks are aggregated in 100-kb bins as follows: I, gene density; II, TE density; III, TR density; IV, GC content; V, SNPs density; VI, the 9 chromosomes (chr1–chr9). c BUSCO completeness scores for the host genome using insecta and hymenoptera databases, and for Wolbachia genome using rickettsiales database. d Features of the three largest centromeres: ① Chr1 (~4 Mb); ② Chr3 (~4 Mb); ③ Chr8 (~3.5 Mb). e Circular map of the wAnd genome. The outermost tracks 1 and 2 represent the positions of the CDS, tRNA, rRNA, and tmRNA genes on the positive and negative strands. Tracks 3 and 4 tracks show the GC content and GC skew, respectively. f Features of the mitochondrial genome.

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