Table. 1 Genomic features between two haplotypes of cointree
Contents | HapA | HapB |
|---|---|---|
Assembly size (bp) | 306,658,714 | 306,212,395 |
Contig N50 (bp) | 24,914,812 | 24,941,561 |
Chromosome number (n) | 12 | 12 |
Completeness of genome BUSCO (%) | 98.90 | 98.90 |
HiFi reads mapping rate (%) | 99.74 | 99.74 |
Repeat content (% of genome) | 47.57 | 47.37 |
Gypsy elements (% of genome) | 12.44 | 12.52 |
Copia elements (% of genome) | 6.76 | 6.75 |
LTR Assembly Index (LAI) | 18.55 | 18.62 |
Number of Intact LTR | 1,676 | 1,637 |
Size of intact LTR (% of genome) | 3.47 | 3.38 |
Protein-coding genes | 29,165 | 29,238 |
Annotated protein-coding genes | 26,700 | 26,740 |
Paralogous collinear blocks | 164 | 161 |
Paralogous collinear genes (% of total genes) | 13.18 | 13.22 |
Paralogous collinear regions (% of genome) | 52.11 | 53.90 |
