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Ambiphilic behavior of hydrogen in trisubstituted silanes induced by substituent controlled polarity inversion
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  • Published: 20 March 2026

Ambiphilic behavior of hydrogen in trisubstituted silanes induced by substituent controlled polarity inversion

  • Vítězslav Hrubý1,
  • Debashree Manna  ORCID: orcid.org/0000-0002-1080-80682,
  • Rabindranath Lo  ORCID: orcid.org/0000-0002-4436-36182 &
  • …
  • Pavel Hobza  ORCID: orcid.org/0000-0001-5292-67192,3 

Communications Chemistry , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Chemical physics
  • Computational chemistry

Abstract

Atomic partial charges are local, model-dependent descriptors that often fail to capture the global electrostatic environment governing chemical reactivity. This study demonstrates that the molecular electrostatic potential (ESP) at the Si–H hydrogen in trisubstituted silanes reliably predicts electrophilic versus nucleophilic behavior, whereas local charges alone can mislead. Electron-donating substituents generate hydridic hydrogens with negative ESP near hydrogen, favoring nucleophilicity. Electron-withdrawing substituents typically leave hydrogen with a negative local charge but generate a positive ESP region along the Si–H axis, promoting electrophilic character. Increasing solvent polarity amplifies these contrasts, driving minima more negative for electron-donating substituents and maxima more positive for electron-withdrawing substituents. The resulting positive region near hydrogen in electron-withdrawing silanes is directionally σ-hole-like, yet unlike classical σ-holes from lone-pair depletion, it reflects a collective molecular electrostatic effect. These findings highlight the importance of global electrostatics for understanding structure–reactivity relationships and predicting substituent-controlled behavior in silicon hydrides.

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Data availability

The data that support the findings of this study are available in the supporting information of this article. The publication data are available at ZENODO https://doi.org/10.5281/zenodo.18852906 under the same title.

References

  1. Feynman, R. P. Forces in Molecules. Phys. Rev. 56, 340–343 (1939).

    Google Scholar 

  2. Suresh, C. H. & Anila, S. Molecular electrostatic potential topology analysis of noncovalent interactions. Acc. Chem. Res. 56, 1884–1895 (2023).

    Google Scholar 

  3. Cho, M. et al. The atomic partial charges arboretum: trying to see the forest for the trees. ChemPhysChem 21, 688–696 (2020).

    Google Scholar 

  4. Mahmoudi, S. et al. Experimental determination of partial charges with electron diffraction. Nature 645, 88–94 (2025).

    Google Scholar 

  5. Murray, J. S. & Politzer, P. The electrostatic potential: an overview. WIREs Comput. Mol. Sci. 1, 153–163 (2011).

    Google Scholar 

  6. Bulat, F. A., Toro-Labbé, A., Brinck, T., Murray, J. S. & Politzer, P. Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies. J. Mol. Model 16, 1679–1691 (2010).

    Google Scholar 

  7. Politzer, P., Landry, S. J. & Waernheim, T. Proposed procedure for using electrostatic potentials to predict and interpret nucleophilic processes. J. Phys. Chem. 86, 4767–4771 (1982).

    Google Scholar 

  8. Politzer, P., Laurence, P. R. & Jayasuriya, K. Molecular electrostatic potentials: an effective tool for the elucidation of biochemical phenomena. Environ. Health Perspect. 61, 191–202 (1985).

    Google Scholar 

  9. Brinck, T., Murray, J. S. & Politzer, P. Surface electrostatic potentials of halogenated methanes as indicators of directional intermolecular interactions. Int. J. Quantum Chem. 44, 57–64 (1992).

    Google Scholar 

  10. Suresh, C. H., Remya, G. S. & Anjalikrishna, P. K. Molecular electrostatic potential analysis: a powerful tool to interpret and predict chemical reactivity. WIREs Comput. Mol. Sci. 12, e1601 (2022).

    Google Scholar 

  11. Haritha, M. & Suresh, C. H. The fundamental nature and importance of electrostatic potential in hydrogen bond formation: a case study of heterocycles frequently observed in drugs. N. J. Chem. 47, 17323–17332 (2023).

    Google Scholar 

  12. Shin, D. & Jung, Y. Molecular electrostatic potential as a general and versatile indicator for electronic substituent effects: statistical analysis and applications. Phys. Chem. Chem. Phys. 24, 25740–25752 (2022).

    Google Scholar 

  13. Mallada, B. et al. Real-space imaging of anisotropic charge of σ-hole by means of Kelvin probe force microscopy. Science 374, 863–867 (2021).

    Google Scholar 

  14. Politzer, P., Murray, J. S. & Clark, T. Halogen bonding and other σ-hole interactions: a perspective. Phys. Chem. Chem. Phys. 15, 11178 (2013).

    Google Scholar 

  15. Clark, T., Hennemann, M., Murray, J. S. & Politzer, P. Halogen bonding: the σ-hole: Proceedings of “Modeling interactions in biomolecules II”, Prague, September 5th–9th, 2005. J. Mol. Model 13, 291–296 (2007).

    Google Scholar 

  16. Kolář, M. H. & Hobza, P. Computer modeling of Halogen Bonds and other σ-Hole interactions. Chem. Rev. 116, 5155–5187 (2016).

    Google Scholar 

  17. Manna, D. et al. Beyond deshielding: NMR evidence of shielding in hydridic and protonic hydrogen bonds. J. Chem. Theory Comput. 21, 7495–7502 (2025).

    Google Scholar 

  18. Civiš, S. et al. Hydrogen bonding with hydridic hydrogen–experimental low-temperature IR and computational study: is a revised definition of hydrogen bonding appropriate? J. Am. Chem. Soc. 145, 8550–8559 (2023).

    Google Scholar 

  19. Mirza, Y. K., Bera, P. S., Mohite, S. B., Pandey, A. K. & Bera, M. Silanes as a versatile hydride source for Ni–H catalysis: a promising tool for π-hydro functionalization. Org. Chem. Front. 11, 4290–4317 (2024).

    Google Scholar 

  20. Scheiner, S. Lower limits on hydrogen bond strength. Charge of bridging H atom. Phys. Chem. Chem. Phys. 27, 10283–10290 (2025).

    Google Scholar 

  21. Adamo, C. & Barone, V. Toward reliable density functional methods without adjustable parameters: the PBE0 model. J. Chem. Phys. 110, 6158–6170 (1999).

    Google Scholar 

  22. Grimme, S., Antony, J., Ehrlich, S. & Krieg, H. A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J. Chem. Phys. 132, 154104 (2010).

    Google Scholar 

  23. Weigend, F. & Ahlrichs, R. Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: design and assessment of accuracy. Phys. Chem. Chem. Phys. 7, 3297 (2005).

    Google Scholar 

  24. Mardirossian, N. & Head-Gordon, M. B97M-V: a combinatorially optimized, range-separated hybrid, density functional with VV10 nonlocal correlation. J. Chem. Phys. 144, 214110 (2016).

    Google Scholar 

  25. Zhao, Y. & Truhlar, D. G. The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition metals: stocktaking and recommendations for multivariate density functionals and tests of design-constrained functionals. Theor. Chem. Acc. 120, 215–241 (2008).

    Google Scholar 

  26. Riplinger, C., Pinski, P., Becker, U., Valeev, E. F. & Neese, F. Sparse maps—a systematic infrastructure for reduced-scaling electronic structure methods. II. Linear scaling domain based pair natural orbital coupled cluster theory. J. Chem. Phys. 144, 024109 (2016).

    Google Scholar 

  27. Saitow, M., Becker, U., Riplinger, C., Valeev, E. F. & Neese, F. A new near-linear scaling, efficient and accurate, open-shell domain-based local pair natural orbital coupled cluster singles and doubles theory. J. Chem. Phys. 146, 164105 (2017).

    Google Scholar 

  28. Guo, Y. et al. Communication: An improved linear scaling perturbative triples correction for the domain based local pair natural orbital based singles and doubles coupled cluster method [DLPNO-CCSD(T)]. J. Chem. Phys. 148, 011101 (2018).

    Google Scholar 

  29. Klamt, A. & Schüürmann, G. COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient. J. Chem. Soc. Perkin Trans. 2, 799–805 (1993).

    Google Scholar 

  30. Qin, L. et al. The strongest dative bond in main-group compounds. Theoretical study of OAeF− (Ae = Be–Ba). Phys. Chem. Chem. Phys. 26, 24294–24313 (2024).

    Google Scholar 

  31. Benkeser, R. A., Foley, K. M., Grutzner, J. B. & Smith, W. E. Evidence for the existence of the trichlorosilyl anion. J. Am. Chem. Soc. 92, 3–7 (1970).

    Google Scholar 

  32. Lamanec, M., Špirko, V., Civiš, S. & Hobza, P. Blue-shifting hydridic hydrogen bonds in complexes of (Me3Si)3SiH. J. Phys. Chem. A 129, 11512–11522 (2025).

    Google Scholar 

  33. Wolinski, K., Hinton, J. F. & Pulay, P. Efficient implementation of the gauge-independent atomic orbital method for NMR chemical shift calculations. J. Am. Chem. Soc. 112, 8251–8260 (1990).

    Google Scholar 

  34. Fulmer, G. R. et al. NMR chemical shifts of trace impurities: common laboratory solvents, organics, and gases in deuterated solvents relevant to the organometallic chemist. Organometallics 29, 2176–2179 (2010).

    Google Scholar 

  35. Goyary, S., Sarmah, M. J., Goswami, H. P. & Nath, N. Solvent-induced 1H NMR chemical shifts of annulenes. Comput. Theor. Chem. 1236, 114601 (2024).

    Google Scholar 

  36. Harris, R. K. et al. Further conventions for NMR shielding and chemical shifts (IUPAC Recommendations 2008). Magn. Reson. Chem. 46, 596–622 (2008).

    Google Scholar 

  37. Ramsey, N. F. Magnetic shielding of nuclei in molecules. Physica 17, 303–307 (1951).

    Google Scholar 

  38. McGarvey, B. R. Temperature dependence of the pseudocontact shift in lanthanide shift reagents. J. Magn. Reson. 33, 445–455 (1979).

    Google Scholar 

  39. Kurland, R. J. & McGarvey, B. R. Isotropic NMR shifts in transition metal complexes: The calculation of Fermi contact and pseudocontact terms. J. Magn. Reson. 2, 286–301 (1970).

    Google Scholar 

  40. M. J. Frisch. et al. Gaussian 16, Revision C.01; Gaussian, Inc.: Wallingford, CT, 2016.

  41. Reed, A. E., Curtiss, L. A. & Weinhold, F. Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem. Rev. 88, 899–926 (1988).

    Google Scholar 

  42. Hirshfeld, F. L. Bonded-atom fragments for describing molecular charge densities. Theor. Chim. Acta 44, 129–138 (1977).

    Google Scholar 

  43. Marenich, A. V., Jerome, S. V., Cramer, C. J. & Truhlar, D. G. Charge model 5: an extension of Hirshfeld population analysis for the accurate description of molecular interactions in gaseous and condensed phases. J. Chem. Theory Comput. 8, 527–541 (2012).

    Google Scholar 

  44. Lu, T. & Chen, F. Atomic dipole moment corrected Hirshfeld population method. J. Theor. Comput. Chem. 11, 163–183 (2012).

    Google Scholar 

  45. Bader, R. F. W. Atoms in Molecules: A Quantum Theory(Clarendon Press, 1990).

  46. Lu, T. & Chen, F. Multiwfn: a multifunctional wavefunction analyzer. J. Comput. Chem. 33, 580–592 (2012).

    Google Scholar 

  47. Breneman, C. M. & Wiberg, K. B. Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis. J. Comput. Chem. 11, 361–373 (1990).

    Google Scholar 

  48. Neese, F. Software update: the ORCA program system—Version 5.0. WIREs Comput. Mol. Sci. 12, e1606 (2022).

    Google Scholar 

  49. Martyna, G. J., Klein, M. L. & Tuckerman, M. Nosé–Hoover chains: the canonical ensemble via continuous dynamics. J. Chem. Phys. 97, 2635–2643 (1992).

    Google Scholar 

  50. Martyna, G. J., Tuckerman, M. E., Tobias, D. J. & Klein, M. L. Explicit reversible integrators for extended systems dynamics. Mol. Phys. 87, 1117–1157 (1996).

    Google Scholar 

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Acknowledgements

This article has been produced with the financial support of the European Union under the REFRESH – Research Excellence for Region Sustainability and High-tech Industries project number CZ.10.03.01/00/22_003/0000048 via the Operational Programme Just Transition (P.H.). V.H. acknowledges the support from ERDF/ESF Project TECHSCALE (Grant CZ.02.01.01/00/22_008/0004587).

Author information

Authors and Affiliations

  1. Vítězslav Hrubý Regional Centre of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Olomouc, Czech Republic

    Vítězslav Hrubý

  2. Dr. Rabindranath Lo, Dr. Debashree Manna, and Prof. Pavel Hobza Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic

    Debashree Manna, Rabindranath Lo & Pavel Hobza

  3. Prof. Pavel Hobza IT4Innovations, VŠB-Technical University of Ostrava, Ostrava, Poruba, Czech Republic

    Pavel Hobza

Authors
  1. Vítězslav Hrubý
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  2. Debashree Manna
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Contributions

P.H. supervised the project. R.L. and D.M. carried out the quantum chemical calculations. V.H. performed the experiments. All authors discussed the results and commented on the manuscript.

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Correspondence to Debashree Manna, Rabindranath Lo or Pavel Hobza.

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Communications Chemistry thanks Rodrigo Cormanich and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.

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Hrubý, V., Manna, D., Lo, R. et al. Ambiphilic behavior of hydrogen in trisubstituted silanes induced by substituent controlled polarity inversion. Commun Chem (2026). https://doi.org/10.1038/s42004-026-01980-1

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  • Received: 27 January 2026

  • Accepted: 05 March 2026

  • Published: 20 March 2026

  • DOI: https://doi.org/10.1038/s42004-026-01980-1

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