Abstract
Algal blooms are becoming more frequent and intense in lakes worldwide, but how bloom intensity and timing co-vary at the global scale is unclear. Here we analyze two decades of Moderate Resolution Imaging Spectroradiometer satellite observations for 4085 lakes ( > 20 square kilometres) to compare changes in intensity (fractional floating algal cover) and timing (start and end dates) of surface algal bloom. We find that intensity and timing often change independently: about 71% of lakes show increasing intensity, mainly associated with higher population density and agricultural pressure, whereas temperature and wind better explain shifts in bloom timing, especially in cold regions. Under a medium-emission scenario, tropical lakes show rapid intensification with modest timing shifts, while cold-region lakes exhibit regionally contrasting timing changes. This decoupling may alter lake food webs and carbon cycling, underscoring the need for region-specific management strategies under climate change.
Similar content being viewed by others
Data availability
The MODIS images, Landsat images, and the GSWO dataset are available in the Google Earth Engine dataset (https://developers.google.com/earth-engine/datasets/catalog). The HydroLAKES dataset was downloaded from https://www.hydrosheds.org/products/hydrolakes, and the HydroBASINS dataset was obtained from https://www.hydrosheds.org/products/hydrobasins. The climate data were obtained from https://data.isimip.org/search/tree/ISIMIP3b/SecondaryInputData/climate/atmosphere/mri-esm2-0/. The population density data were obtained from https://data.isimip.org/search/tree/ISIMIP2b/SecondaryInputData/socioeconomic/pop. The CROP data were obtained from https://luh.umd.edu/data.shtml. The GDP dataset was obtained from https://zenodo.org/records/7898409. The land surface temperature data used to select lakes were obtained from https://disc.gsfc.nasa.gov/datasets/FLDAS_NOAH01_C_GL_M_001/summary. Nitrogen and phosphorus fertilizer usage data was downloaded from https://doi.org/10.1594/PANGAEA.863323. The processed lake-level datasets generated in this study, including mean bloom phenology, long-term trend metrics, future projection outputs, and the source data underlying the main figures and selected Supplementary Figs., are available in Figshare at https://doi.org/10.6084/m9.figshare.3144986587.
Code availability
Example scripts illustrating the core analytical workflow used in this study are available in Figshare at https://doi.org/10.6084/m9.figshare.3148922288. The code package includes: (1) an example script for FAC calculation for one lake, (2) an example daily FAC CSV output, (3) a MATLAB function for bloom phenology estimation from daily FAC time series, and (4) a MATLAB function for PCA and PCR.
References
Ho, J. C. & Michalak, A. M. Challenges in tracking harmful algal blooms: a synthesis of evidence from Lake Erie. J. Gt. Lakes Res. 41, 317–325 (2015).
Srivastava, A., Singh, S., Ahn, C. Y., Oh, H. M. & Asthana, R. K. Monitoring approaches for a toxic cyanobacterial bloom. Environ. Sci. Technol. 47, 8999–9013 (2013).
Sommer, U. et al. Beyond the Plankton Ecology Group (PEG) model: mechanisms driving plankton succession. Annu. Rev. Ecol. Evol. Syst. 43, 429–448 (2012).
Michalak, A. M. Study role of climate change in extreme threats to water quality. Nature 535, 349–350 (2016).
Paerl, H. W. & Huisman, J. Climate change: a catalyst for global expansion of harmful cyanobacterial blooms. Environ. Microbiol. Rep. 1, 27–37 (2009).
Brooks, B. W. et al. Are harmful algal blooms becoming the greatest inland water quality threat to public health and aquatic ecosystems? Environ. Toxicol. Chem. 35, 6–13 (2016).
Qin, B. et al. Why Lake Taihu continues to be plagued with cyanobacterial blooms through 10 years (2007-2017) efforts. Sci. Bull. 64, 354–356 (2019).
Maeda, E. E. et al. Temporal patterns of phytoplankton phenology across high latitude lakes unveiled by long-term time series of satellite data. Remote Sens. Environ. 221, 609–620 (2019).
Shi, K., Zhang, Y., Qin, B. & Zhou, B. Remote sensing of cyanobacterial blooms in inland waters: present knowledge and future challenges. Sci. Bull. 64, 1540–1556 (2019).
Edwards, M. & Richardson, A. J. Impact of climate change on marine pelagic phenology and trophic mismatch. Nature 430, 881–884 (2004).
Henson, S. A., Cole, H. S., Hopkins, J., Martin, A. P. & Yool, A. Detection of climate change-driven trends in phytoplankton phenology. Glob. Change Biol. 24, e101–e111 (2018).
Gittings, J. A. et al. Evaluating tropical phytoplankton phenology metrics using contemporary tools. Sci. Rep. 9, 674 (2019).
Kahru, M., Brotas, V., Manzano-Sarabia, M. & Mitchell, B. G. Are phytoplankton blooms occurring earlier in the Arctic? Glob. Change Biol. 17, 1733–1739 (2011).
Sarmiento, J. L. et al. Response of ocean ecosystems to climate warming. Glob. Biogeochem. Cycles 18, GB3003 (2004).
Wells, M. L. et al. Harmful algal blooms and climate change: learning from the past and present to forecast the future. Harmful Algae 49, 68–93 (2015).
Platt, T., White, G. N., Zhai, L., Sathyendranath, S. & Roy, S. The phenology of phytoplankton blooms: ecosystem indicators from remote sensing. Ecol. Model. 220, 3057–3069 (2009).
Kheireddine, M., Mayot, N., Ouhssain, M. & Jones, B. H. Regionalization of the red sea based on phytoplankton phenology: a satellite analysis. J. Geophys. Res. Oceans 126, e2021JC017486 (2021).
Hopkins, J., Henson, S. A., Painter, S. C., Tyrrell, T. & Poulton, A. J. Phenological characteristics of global coccolithophore blooms. Glob. Biogeochem. Cycles 29, 239–253 (2015).
Ho, J. C., Michalak, A. M. & Pahlevan, N. Widespread global increase in intense lake phytoplankton blooms since the 1980s. Nature 574, 667–670 (2019).
Hou, X. et al. Global mapping reveals increase in lacustrine algal blooms over the past decade. Nat. Geosci. 15, 130–134 (2022).
Dai, Y. et al. Coastal phytoplankton blooms expand and intensify in the 21st century. Nature 615, 280–284 (2023).
Fang, C. et al. Global divergent trends of algal blooms detected by satellite during 1982-2018. Glob. Change Biol. 28, 2327–2340 (2022).
Brody, S. R., Lozier, M. S. & Dunne, J. P. A comparison of methods to determine phytoplankton bloom initiation. J. Geophys. Res. Oceans 118, 2345–2357 (2013).
Sasaoka, K., Chiba, S. & Saino, T. Climatic forcing and phytoplankton phenology over the subarctic North Pacific from 1998 to 2006, as observed from ocean color data. Geophys. Res. Lett. 38, L15609 (2011).
D’Ortenzio, F., Antoine, D., Martinez, E. & Ribera d’Alcalà, M. Phenological changes of oceanic phytoplankton in the 1980s and 2000s as revealed by remotely sensed ocean-color observations. Glob. Biogeochem. Cycles 26, GB4003 (2012).
Ji, R., Edwards, M., Mackas, D. L., Runge, J. A. & Thomas, A. C. Marine plankton phenology and life history in a changing climate: current research and future directions. J. Plankton Res. 32, 1355–1368 (2010).
Maguire, T. J., Isabwe, A., Stow, C. A. & Godwin, C. M. Defining algal bloom phenology in Lake Erie. Harmful Algae 139, 102731 (2024).
Thomalla, S. J., Nicholson, S.-A., Ryan-Keogh, T. J. & Smith, M. E. Widespread changes in Southern Ocean phytoplankton blooms linked to climate drivers. Nat. Clim. Change 13, 975–984 (2023).
Palmer, S. C. J. et al. Satellite remote sensing of phytoplankton phenology in Lake Balaton using 10years of MERIS observations. Remote Sens. Environ. 158, 441–452 (2015).
Chen, J. et al. Algal blooms in Lake Taihu: Earlier onset and extended duration. Harmful Algae 148, 102917 (2025).
Song, K. et al. Climatic versus anthropogenic controls of decadal trends (1983-2017) in algal blooms in lakes and reservoirs across China. Environ. Sci. Technol. 55, 2929–2938 (2021).
Ali, G. & English, C. Phytoplankton blooms in Lake Winnipeg linked to selective water-gatekeeper connectivity. Sci. Rep. 9, 8395 (2019).
Gobler, C. J. Climate change and harmful algal blooms: insights and perspective. Harmful Algae 91, 101731 (2020).
Kudela, R. M., Lane, J. Q. & Cochlan, W. P. The potential role of anthropogenically derived nitrogen in the growth of harmful algae in California, USA. Harmful Algae 8, 103–110 (2008).
Paerl, H. W. & Paul, V. J. Climate change: links to global expansion of harmful cyanobacteria. Water Res. 46, 1349–1363 (2012).
Ho, J. C. & Michalak, A. M. Exploring temperature and precipitation impacts on harmful algal blooms across continental U.S. lakes. Limnol. Oceanogr. 65, 992–1009 (2019).
Woolway, R. I. et al. Global lake responses to climate change. Nat. Rev. Earth Environ. 1, 388–403 (2020).
Merder, J. et al. Geographic redistribution of microcystin hotspots in response to climate warming. Nat. Water 1, 844–854 (2023).
Irani Rahaghi, A. et al. Combined Earth observations reveal the sequence of conditions leading to a large algal bloom in Lake Geneva. Commun. Earth Environ. 5, 229 (2024).
Kakouei, K. et al. Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections. Glob. Change Biol. 27, 6409–6422 (2021).
Nepal, D. & Parajuli, P. Hydrology and water quality evaluation for potential HABs under future climate scenarios. J. Environ. Manag. 374, 124033 (2025).
Scavia, D. et al. Quantifying uncertainty cascading from climate, watershed, and lake models in harmful algal bloom predictions. Sci. Total. Environ. 759, 143487 (2021).
Feng, L. et al. Harmful algal blooms in inland waters. Nat. Rev. Earth Environ. 5, 631–644 (2024).
Burford, M. A. et al. Perspective: advancing the research agenda for improving understanding of cyanobacteria in a future of global change. Harmful Algae 91, 101601 (2020).
Wang, Y. et al. Global elevation of algal bloom frequency in large lakes over the past two decades. Natl. Sci. Rev. 12, nwaf011 (2025).
Wang, X., Shi, K., Qin, B., Zhang, Y. & Woolway, R. I. Disproportionate impact of atmospheric heat events on lake surface water temperature increases. Nat. Clim. Change 14, 1172–1177 (2024).
Gallina, N., Beniston, M. & Jacquet, S. Estimating future cyanobacterial occurrence and importance in lakes: a case study with Planktothrix rubescens in Lake Geneva. Aquat. Sci. 79, 249–263 (2017).
Zhang, Y. et al. Spatiotemporal variations in global lake clarity and responses to climate and landscape drivers. Sci. Bull. 70, 4091–4103 (2025).
Chapra, S. C. et al. Climate change impacts on harmful algal blooms in U.S. freshwaters: a screening-level assessment. Environ. Sci. Technol. 51, 8933–8943 (2017).
Verbeek, L., Gall, A., Hillebrand, H. & Striebel, M. Warming and oligotrophication cause shifts in freshwater phytoplankton communities. Glob. Change Biol. 24, 4532–4543 (2018).
Walters, A. W., Sagrario, M. dlÁG. & Schindler, D. E. Species- and community-level responses combine to drive phenology of lake phytoplankton. Ecology 94, 2188–2194 (2013).
Urrutia-Cordero, P., Ekvall, M. K. & Hansson, L.-A. Local food web management increases resilience and buffers against global change effects on freshwaters. Sci. Rep. 6, 29542 (2016).
Thackeray, S. J. et al. Food web de-synchronization in England’s largest lake: an assessment based on multiple phenological metrics. Glob. Change Biol. 19, 3568–3580 (2013).
Asch, R. G., Stock, C. A. & Sarmiento, J. L. Climate change impacts on mismatches between phytoplankton blooms and fish spawning phenology. Glob. Change Biol. 25, 2544–2559 (2019).
Lu, C. & Tian, H. Global nitrogen and phosphorus fertilizer use for agriculture production in the past half century: shifted hot spots and nutrient imbalance. Earth Syst. Sci. Data 9, 181–192 (2017).
Henson, S., Cole, H., Beaulieu, C. & Yool, A. The impact of global warming on seasonality of ocean primary production. Biogeosciences 10, 4357–4369 (2013).
Geng, M. et al. Spatiotemporal water quality variations and their relationship with hydrological conditions in Dongting Lake after the operation of the Three Gorges Dam, China. J. Clean. Prod. 283, 124644 (2021).
Yamaguchi, R. et al. Trophic level decoupling drives future changes in phytoplankton bloom phenology. Nat. Clim. Change 12, 469–476 (2022).
Fraker, M. E. et al. Agricultural conservation practices could help offset climate change impacts on cyanobacterial harmful algal blooms in Lake Erie. J. Gt. Lakes Res. 49, 209–219 (2023).
Wells, M. L., Karlson, B., Wulff, A. & Kudela, R. in Treatise on Estuarine and Coastal Science (Second Edition) Vol. 4 (eds Daniel Baird & Michael Elliott) 496–517 (Academic Press, 2024).
Winder, M. & Sommer, U. Phytoplankton response to a changing climate. Hydrobiologia 698, 5–16 (2012).
Pálffy, K. & Smeti, E. Combined effect of warming, nutrients, and species pool size on the seasonal variability of phytoplankton composition: a modeling perspective. Limnol. Oceanogr. 69, 1056–1069 (2024).
Gorelick, N. et al. Google Earth Engine: planetary-scale geospatial analysis for everyone. Remote Sens. Environ. 202, 18–27 (2017).
Vermote, E., Justice, C., Claverie, M. & Franch, B. Preliminary analysis of the performance of the Landsat 8/OLI land surface reflectance product. Remote Sens. Environ. 185, 46–56 (2016).
Messager, M. L., Lehner, B., Grill, G., Nedeva, I. & Schmitt, O. Estimating the volume and age of water stored in global lakes using a geo-statistical approach. Nat. Commun. 7, 13603 (2016).
Lehner, B. & Grill, G. Global river hydrography and network routing: baseline data and new approaches to study the world’s large river systems. Hydrol. Process. 27, 2171–2186 (2013).
Pekel, J.-F., Cottam, A., Gorelick, N. & Belward, A. S. High-resolution mapping of global surface water and its long-term changes. Nature 540, 418–422 (2016).
Lange, S. tefan & Büchner, M. ISIMIP3b bias-adjusted atmospheric climate input data (v1.1). ISIMIP Repos. https://doi.org/10.48364/ISIMIP.842396.842391 (2021).
Piontek, F. ranziska & Geiger, T. ISIMIP2b secondary population input data (v1.0). ISIMIP Repos. https://doi.org/10.48364/ISIMIP.432399 (2017).
Hurtt, G. C. et al. Harmonization of global land use change and management for the period 850–2100 (LUH2) for CMIP6. Geosci. Model Dev. 13, 5425–5464 (2020).
Wang, T. & Sun, F. Global gridded GDP data set consistent with the shared socioeconomic pathways. Sci. Data 9, 221 (2022).
Kirillin, G. et al. Physics of seasonally ice-covered lakes: a review. Aquat. Sci. 74, 659–682 (2012).
Zhang, Y. et al. Fourteen-year record (2000–2013) of the spatial and temporal dynamics of floating algae blooms in Lake Chaohu, observed from time series of MODIS images. Remote Sens. 7, 10523–10542 (2015).
Qi, L., Hu, C., Visser, P. M. & Ma, R. Diurnal changes of cyanobacteria blooms in Taihu Lake as derived from GOCI observations. Limnol. Oceanogr. 63, 1711–1726 (2018).
Cui, T. W. et al. Assessing and refining the satellite-derived massive green macro-algal coverage in the Yellow Sea with high resolution images. ISPRS J. Photogramm. Remote Sens. 144, 315–324 (2018).
Xiao, Y., Zhang, J. & Cui, T. High-precision extraction of nearshore green tides using satellite remote sensing data of the Yellow Sea, China. Int. J. Remote Sens. 38, 1626–1641 (2017).
Xue, K. et al. Monitoring fractional floating algae cover over eutrophic lakes using multisensor satellite images: MODIS, VIIRS, GOCI, and OLCI. IEEE Trans. Geosci. Remote Sens. 60, 1–15 (2022).
Hu, C. A novel ocean color index to detect floating algae in the global oceans. Remote Sens. Environ. 113, 2118–2129 (2009).
Che, X., Zhang, H. K. & Liu, J. Making Landsat 5, 7 and 8 reflectance consistent using MODIS nadir-BRDF adjusted reflectance as reference. Remote Sens. Environ. 262, 112517 (2021).
Hu, C. et al. Moderate Resolution Imaging Spectroradiometer (MODIS) observations of cyanobacteria blooms in Taihu Lake, China. J. Geophys. Res. 115, 303–306 (2010).
Cole, H., Henson, S., Martin, A. & Yool, A. Mind the gap: the impact of missing data on the calculation of phytoplankton phenology metrics. J. Geophys. Res. Oceans 117, https://doi.org/10.1029/2012JC008249 (2012).
Henson, S. A., Dunne, J. P. & Sarmiento, J. L. Decadal variability in North Atlantic phytoplankton blooms. J. Geophys. Res. Oceans 114, https://doi.org/10.1029/2008JC005139 (2009).
Siegel, D. A., Doney, S. C. & Yoder, J. A. The North Atlantic spring phytoplankton bloom and sverdrup’s critical depth hypothesis. Science 296, 730–733 (2002).
Liang, Q. et al. A MODIS-based novel method to distinguish surface cyanobacterial scums and aquatic macrophytes in Lake Taihu. Remote Sens 9, 133 (2017).
Rigby, R. A. & Stasinopoulos, D. M. Generalized additive models for location, scale and shape. J. R. Stat. Soc. Ser. C Appl. Stat. 54, https://doi.org/10.1111/j.1467-9876.2005.00510.x (2005).
O’Neill, B. C. et al. The Scenario Model Intercomparison Project (ScenarioMIP) for CMIP6. Geosci. Model Dev. 9, 3461–3482 (2016).
Xue, K., Ma, R., Hu, M. & Li, Y. Algal bloom intensity and timing in global 4085 lakes derived from MODIS. Figshare https://doi.org/10.6084/m9.figshare.31449865 (2026).
Xue, K., Ma, R., Hu, M. & Li, Y. Example data and code for FAC-based bloom phenology extraction and PCA/PCR analysis in global lakes. Figshare https://doi.org/10.6084/m9.figshare.31489222 (2026).
Acknowledgements
The authors thank the colleagues from NIGLAS (Hanhan Li, Xiqoqi Wei, Zehui Huang, Haoze Liu, Xinhui Chen, Yiqiu Wu, Zhengyang Yu, Mingming Deng) for their help with field measurements and data collections. This work was supported by the National Natural Science Foundation of China (Nos. 42361144002, 42371371, and 42301406), and the National Key R&D Program of China (No. 2022YFF0711603).
Author information
Authors and Affiliations
Contributions
Kun Xue: Methodology, data curation, formal analysis, visualization, and writing of the original draft. Ronghua Ma: Conceptualization, supervision, funding acquisition, editing of the manuscript. Minqi Hu: Data processing, formal analysis, review, and editing of the manuscript. Yao Li: Data analysis, review, and editing of the manuscript.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Peer review
Peer review information
Communications Earth and Environment thanks the anonymous reviewers for their contribution to the peer review of this work. Primary Handling Editors: Somaparna Ghosh A peer review file is available.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.
About this article
Cite this article
Xue, K., Ma, R., Hu, M. et al. Anthropogenic and climatic factors regulate algal bloom intensity and timing in global lakes under climate change. Commun Earth Environ (2026). https://doi.org/10.1038/s43247-026-03446-7
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/s43247-026-03446-7


