Extended Data Fig. 1: Unsupervised clustering of plaques based on transcriptomics data. | Nature Cardiovascular Research

Extended Data Fig. 1: Unsupervised clustering of plaques based on transcriptomics data.

From: Transcriptomic-based clustering of human atherosclerotic plaques identifies subgroups with different underlying biology and clinical presentation

Extended Data Fig. 1: Unsupervised clustering of plaques based on transcriptomics data.

a) PCA plot and b) tSNE projection of the 654 plaque samples based on RNA-seq dataset. The color indicates the cluster corresponding to the plaque type cluster from the SNN modularity optimization based clustering algorithm. c) Distribution of non-ribosomal protein-coding genes with annotated HGNC name; reads mapping to mitochondrial genes and mean Pearson correlation of samples per cluster

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