Fig. 2: Midpoint rooted maximum-likelihood core genome phylogenetic tree of K. pneumoniae ST20 (alignment length: 3,638,007 bp; variable sites: 29,487; IQTREE Best Fit Model: GTR + F+ R5). | npj Antimicrobials and Resistance

Fig. 2: Midpoint rooted maximum-likelihood core genome phylogenetic tree of K. pneumoniae ST20 (alignment length: 3,638,007 bp; variable sites: 29,487; IQTREE Best Fit Model: GTR + F+ R5).

From: Next generation ESKAPE-E superbugs: identifying transmissible locus of stress tolerance and antibiotic resistance in pandemic bacterial lineages

Fig. 2: Midpoint rooted maximum-likelihood core genome phylogenetic tree of K. pneumoniae ST20 (alignment length: 3,638,007 bp; variable sites: 29,487; IQTREE Best Fit Model: GTR + F+ R5).

Leaf labels in red indicate complete genomes included in the earlier part of study. From inner to outer, the coloured rings show tLST variant, source, and country of origin. IncF RST shown as determined by pMLST. The blue heatmap represents yersiniabactin high pathogenicity island (ICEKp) associated genes, followed by intI1 gene length detected. The red heatmap summarises antimicrobial-resistance classes of detected ARGs; with specific colours for ESBLs (light green: blaCTX-M, dark green: others) and carbapenemases (dark brown: blaKPC, light brown: others).

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