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Showing 101–150 of 388 results
Advanced filters: Author: Dan Jones Clear advanced filters
  • Estimates of infection rates from the UK COVID-19 Infection Survey may have been biased by the characteristics of people who chose to take part. Here, the authors show that the survey population had unusually high vaccination rates and adjust infection estimates taking this into account.

    • Koen B. Pouwels
    • David W. Eyre
    • Chris Cunningham
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Genome-wide analysis identifies variants associated with the volume of seven different subcortical brain regions defined by magnetic resonance imaging. Implicated genes are involved in neurodevelopmental and synaptic signaling pathways.

    • Claudia L. Satizabal
    • Hieab H. H. Adams
    • M. Arfan Ikram
    Research
    Nature Genetics
    Volume: 51, P: 1624-1636
  • The world is full of bloody conflicts that can drag on for decades. Some researchers are trying to find resolutions through complexity science.

    • Dan Jones
    News
    Nature
    Volume: 519, P: 148-150
  • The Omicron variant evades vaccine-induced neutralization but also fails to form syncytia, shows reduced replication in human lung cells and preferentially uses a TMPRSS2-independent cell entry pathway, which may contribute to enhanced replication in cells of the upper airway. Altered fusion and cell entry characteristics are linked to distinct regions of the Omicron spike protein.

    • Brian J. Willett
    • Joe Grove
    • Emma C. Thomson
    ResearchOpen Access
    Nature Microbiology
    Volume: 7, P: 1161-1179
  • Analysis of mitochondrial genomes (mtDNA) by using whole-genome sequencing data from 2,658 cancer samples across 38 cancer types identifies hypermutated mtDNA cases, frequent somatic nuclear transfer of mtDNA and high variability of mtDNA copy number in many cancers.

    • Yuan Yuan
    • Young Seok Ju
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 342-352
  • An analysis identifies human monoclonal antibodies that potently neutralize wild-type SARS-CoV-2 and protect animals from disease, including two that synergize in a cocktail, suggesting that these could be candidates for use as therapeutic agents for the treatment of COVID-19 in humans.

    • Seth J. Zost
    • Pavlo Gilchuk
    • James E. Crowe Jr
    Research
    Nature
    Volume: 584, P: 443-449
  • A study shows that clonal haematopoiesis of indeterminate potential is associated with an increased risk of chronic liver disease specifically through the promotion of liver inflammation and injury.

    • Waihay J. Wong
    • Connor Emdin
    • Pradeep Natarajan
    Research
    Nature
    Volume: 616, P: 747-754
  • Better analytical methods are needed to extract biological meaning from genome-wide association studies (GWAS) of psychiatric disorders. Here the authors take GWAS data from over 60,000 subjects, including patients with schizophrenia, bipolar disorder and major depression, and identify common etiological pathways shared amongst them.

    • Colm O'Dushlaine
    • Lizzy Rossin
    • Gerome Breen
    Research
    Nature Neuroscience
    Volume: 18, P: 199-209
  • A case–control study investigating the causes of recent cases of acute hepatitis of unknown aetiology in 32 children identifies an association between adeno-associated virus infection and host genetics in disease susceptibility.

    • Antonia Ho
    • Richard Orton
    • Emma C. Thomson
    Research
    Nature
    Volume: 617, P: 555-563
  • Theoretically predicted in 1979, hyper-Raman optical activity is now experimentally observed through chirality conferral from the electromagnetic field of chiral plasmonic gold nanohelices to crystal violet molecules that are achiral, sparking new science at the organic–inorganic interface.

    • Robin R. Jones
    • John F. Kerr
    • Ventsislav K. Valev
    ResearchOpen Access
    Nature Photonics
    Volume: 18, P: 982-989
  • Protein kinase A (PKA) is a cyclic nucleotide dependent protein kinase. Here the authors use single molecule optical tweezers and steered molecular dynamic simulations to follow in real time and quantitatively characterize the signals transduced by cAMP through the structure of the PKA regulatory subunit, and propose a model for PKA allosteric activation.

    • Yuxin Hao
    • Jeneffer P. England
    • Rodrigo A. Maillard
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • This paper reports integrative molecular analyses of urothelial bladder carcinoma at the DNA, RNA, and protein levels performed as part of The Cancer Genome Atlas project; recurrent mutations were found in 32 genes, including those involved in cell-cycle regulation, chromatin regulation and kinase signalling pathways; chromatin regulatory genes were more frequently mutated in urothelial carcinoma than in any other common cancer studied so far.

    • John N. Weinstein
    • Rehan Akbani
    • Greg Eley
    ResearchOpen Access
    Nature
    Volume: 507, P: 315-322
  • Using their unique bioadhesives, barnacles can adhere to a great variety of surfaces. Here, Gohad et al.show that the barnacle larval bioadhesive contains lipids and phosphoproteins that are organized in a complex structure and work together to maximize adhesion.

    • Neeraj V. Gohad
    • Nick Aldred
    • Andrew S. Mount
    Research
    Nature Communications
    Volume: 5, P: 1-9
  • People's mindsets are neither fixed by evolution nor infinitely malleable by culture. Dan Jones looks for the similarities that underlie the diversity of human nature.

    • Dan Jones
    News
    Nature
    Volume: 457, P: 780-783
  • This study describes the integrative analysis of 111 reference human epigenomes, profiled for histone modification patterns, DNA accessibility, DNA methylation and RNA expression; the results annotate candidate regulatory elements in diverse tissues and cell types, their candidate regulators, and the set of human traits for which they show genetic variant enrichment, providing a resource for interpreting the molecular basis of human disease.

    • Anshul Kundaje
    • Wouter Meuleman
    • Manolis Kellis
    ResearchOpen Access
    Nature
    Volume: 518, P: 317-330
  • Is there wisdom to be found in repugnance? Or is disgust 'the nastiest of all emotions', offering nothing but support to prejudice? Dan Jones looks at the repellant side of human nature.

    • Dan Jones
    News
    Nature
    Volume: 447, P: 768-771
  • Known genetic loci account for only a fraction of the genetic contribution to Alzheimer’s disease. Here, the authors have performed a large genome-wide meta-analysis comprising 409,435 individuals to discover 6 new loci and demonstrate the efficacy of an Alzheimer’s disease polygenic risk score.

    • Itziar de Rojas
    • Sonia Moreno-Grau
    • Agustín Ruiz
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Understanding the pathology and immunological response to SARS CoV2 infection in specific patient groups is essential for informing the scientific and clinical handling of infections within these patient populations. Here the authors characterise the adaptive immune response to SARS-CoV2 infection in people living with HIV.

    • Aljawharah Alrubayyi
    • Ester Gea-Mallorquí
    • Dimitra Peppa
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Lassa Fever is a rodent-borne viral haemorrhagic fever that is a public health problem in West Africa. Here, the authors develop a spatiotemporal model of the socioecological drivers of disease using surveillance data from Nigeria, and find evidence of climate sensitivity.

    • David W. Redding
    • Rory Gibb
    • Chikwe Ihekweazu
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • Realizing efficient blue-emitting organic light-emitting diodes (OLEDs) with long operational lifetime is key to the development of future display technologies. Here, the authors report efficient host-guest and host-free OLEDs featuring designed carbene-metal-amide-type deep-blue photoemitters.

    • Patrick J. Conaghan
    • Campbell S. B. Matthews
    • Alexander S. Romanov
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-8
  • Many SARS-CoV-2 infections may go undetected through conventional PCR or lateral flow tests. Here, the authors analyse the utility of analysing longitudinal nucleocapsid antibody trajectories to improve identification of prior SARS-CoV-2 infections using surveillance data from the UK.

    • Leslie R. Zwerwer
    • Tim E. A. Peto
    • Chris Cunningham
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • The impact of prior infection on the immune response to COVID-19 vaccination has not been fully characterised. Here, the authors use data from ~100,000 adults in the UK and find that a single vaccine dose in those with prior infection produces a comparable or stronger response to two doses in those without infection.

    • Jia Wei
    • Philippa C. Matthews
    • Chris Cunningham
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-9
  • Most people who are infected with SARS-CoV-2 seroconvert within a few weeks, but the determinants and duration of the antibody response are not known. Here, the authors characterise these features of the immune response using data from a large representative community sample of the UK population.

    • Jia Wei
    • Philippa C. Matthews
    • Chris Cunningham
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Environmental influences during prenatal development may have implications for health and disease later in life. Here, Czamara et al. assess DNA methylation in cord blood from new-born under various models including environmental and genetic effects individually and their additive or interaction effects.

    • Darina Czamara
    • Gökçen Eraslan
    • Elisabeth B. Binder
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-18
  • Post-traumatic stress disorder (PTSD) is a common mental health problem. Here, the authors report a GWAS from the Psychiatric Genomics Consortium in which they identify two risk loci in European ancestry and one locus in African ancestry individuals and find that PTSD is genetically correlated with several other psychiatric traits.

    • Caroline M. Nievergelt
    • Adam X. Maihofer
    • Karestan C. Koenen
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • An antibody-discovery pipeline integrating single-cell mRNA-sequence analysis, bioinformatics, synthetic biology and high-throughput functional analyses enables the rapid discovery of potent human monoclonal antibodies against viral pathogens.

    • Pavlo Gilchuk
    • Robin G. Bombardi
    • Robert H. Carnahan
    Research
    Nature Biomedical Engineering
    Volume: 4, P: 1030-1043
  • Recent collaborations illustrate approaches to address the challenges of developing therapeutics based on RNA interference.

    • Dan Jones
    News
    Nature Reviews Drug Discovery
    Volume: 8, P: 525-526
  • Missegregated chromosomes that are sequestrated in micronuclei are subject to changes in histone modifications leading to abnormalities in chromatin accessibility that remain long after the chromosomes have been reincorporated into the primary nucleus.

    • Albert S. Agustinus
    • Duaa Al-Rawi
    • Samuel F. Bakhoum
    ResearchOpen Access
    Nature
    Volume: 619, P: 176-183
  • Many diseases are driven by the insufficient expression of critical genes, but few technologies are capable of rescuing these endogenous protein levels. Here, Cao et al. present an RNA-based technology that boosts protein production from endogenous mRNAs by upregulating their translation.

    • Yang Cao
    • Huachun Liu
    • Bryan C. Dickinson
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Biomphalaria glabrata is a fresh water snail that acts as a host for trematode Schistosoma mansoni that causes intestinal infection in human. This work describes the genome and transcriptome analyses from 12 different tissues of B glabrata, and identify genes for snail behavior and evolution.

    • Coen M. Adema
    • LaDeana W. Hillier
    • Richard K. Wilson
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • The duration and strength of protection against SARS-CoV-2 infection resulting from a booster vaccine dose or breakthrough infection are not well understood. This study uses data from the UK COVID-19 Infection Survey to investigate correlates of protection against Omicron BA.4/5 infection and assess antibody responses to booster vaccination and breakthrough infections.

    • Jia Wei
    • Philippa C. Matthews
    • Chris Cunningham
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • The changes in super-enhancer (SE) landscape of cancers are mainly attributed to cell-intrinsic genomic alterations. Here, the authors perform epigenomic profiling on primary colorectal cancers (CRCs) and their matched normal tissues and show that local tumour microenvironment induces a SE activation and that its target, PDZK1IP1 promotes CRC growth.

    • Royce W. Zhou
    • Jia Xu
    • Ramon E. Parsons
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-17
  • Aberrant changes in DNA methylation have been implicated in various neurodevelopmental disorders but remain under studied in developmental and epileptic encephalopathies. Here, the authors demonstrate the diagnostic utility of genome-wide DNA methylation analyses toward identifying molecular etiologies in developmental and epileptic encephalopathies.

    • Christy W. LaFlamme
    • Cassandra Rastin
    • Heather C. Mefford
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • A manufacturable platform for quantum computing with photons is introduced and a set of monolithically integrated silicon-photonics-based modules is benchmarked, demonstrating dual-rail photonic qubits with performance close to thresholds required for operation.

    • Koen Alexander
    • Avishai Benyamini
    • Xinran Zhou
    ResearchOpen Access
    Nature
    Volume: 641, P: 876-883