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Showing 1–50 of 310 results
Advanced filters: Author: E. Ballesteros Clear advanced filters
  • Crystal structures of human CB1 bound to two cannabinoid agonists reveal key features, including a twin toggle switch and binding pocket reduction, advancing understanding of receptor dynamics and guiding cannabinoid drug design.

    • Tian Hua
    • Kiran Vemuri
    • Zhi-Jie Liu
    Research
    Nature
    Volume: 646, P: 754-758
  • Solvent-mediated interaction networks control a wide range of protein functions, but their design has been neglected owing to a lack of accurate computational tools. Now it is shown that allosteric signalling membrane proteins can be engineered through such networks, revealing a broader space of designable protein interactions and functions.

    • K.-Y. M. Chen
    • J. K. Lai
    • P. Barth
    ResearchOpen Access
    Nature Chemistry
    Volume: 17, P: 429-438
  • Authors in this study discover a CCKBR agonist MF-8 with β-arrestin bias. This biased agonist can reduce other CCKBR signaling pathways, including Gαs-induced cAMP and Gαq/11-induced calcium signaling, thereby inhibiting the CCKBR-LTP. This discovery provides us with new ideas for developing drugs targeting CCKBR.

    • Heng Shi
    • Mengfan Zhang
    • Jufang He
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • G-protein-coupled receptors bind endogenous ligands at sites that are frequently highly conserved. Here, authors computationally describe alternative allosteric pockets, several of which have not been targeted by synthetic ligands before.

    • Janik B. Hedderich
    • Margherita Persechino
    • Peter Kolb
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • Mapping of the neutrophil compartment using single-cell transcriptional data from multiple physiological and patological states reveals its organizational architecture and how cell state dynamics and trajectories vary during health, inflammation and cancer.

    • Daniela Cerezo-Wallis
    • Andrea Rubio-Ponce
    • Iván Ballesteros
    ResearchOpen Access
    Nature
    Volume: 649, P: 1003-1012
  • Using cryo-electron microscopy, the authors report the structures of G-protein-coupled bile acid receptor–Gs complexes and reveal the structural basis of bile acid recognition.

    • Fan Yang
    • Chunyou Mao
    • Yan Zhang
    Research
    Nature
    Volume: 587, P: 499-504
  • The crystal structure of the human κ-opioid receptor in complex with an antagonist, JDTic, is determined, with potential importance for the design of new therapeutic agents.

    • Huixian Wu
    • Daniel Wacker
    • Raymond C. Stevens
    Research
    Nature
    Volume: 485, P: 327-332
  • Small molecule antagonists of CCR6 are potential drugs for autoimmune disorders. Here the authors present inactive structures of CCR6 bound by different allosteric antagonists from two series simultaneously, offering multiple approaches to inhibit CCR6.

    • David Jonathan Wasilko
    • Brian S. Gerstenberger
    • Huixian Wu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • The Wnt receptor Frizzled (FZD) family is crucial for both canonical (β-catenin dependent) and non-canonical (β-catenin independent) Wnt signalling. Here, the authors present the structures of FZD3 in complex with extracellular and intracellular binding nanobodies (Nbs), elucidating extracellular and intracellular interaction surfaces of functional and potentially therapeutic significance.

    • James Hillier
    • Yuguang Zhao
    • E. Yvonne Jones
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • The drug Xanomeline is progressing through clinical trials for the treatment of patients with schizophrenia. Here, the authors determine a cryo-EM structure of Xanomeline bound to its primary target revealing a dual binding mode mechanism.

    • Wessel A. C. Burger
    • Vi Pham
    • David M. Thal
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • The cryo-EM structure and functional analyses of oxytocin bound to its receptor reveal a Mg2+ coordination complex in the binding pocket and find that the identity of a single residue determines whether a vasopressin/oxytocin family receptor requires Mg2+ as a cofactor.

    • Justin G. Meyerowitz
    • Michael J. Robertson
    • Georgios Skiniotis
    Research
    Nature Structural & Molecular Biology
    Volume: 29, P: 274-281
  • Engineering protein biosensors that respond to biomolecules by triggering cellular responses has largely relied on binding rigid molecules. Here, the authors develop a computational strategy for designing signaling complexes between conformationally dynamic proteins and peptides.

    • Robert E. Jefferson
    • Aurélien Oggier
    • Patrick Barth
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • Using a make-on-demand library that contains hundreds-of-millions of molecules, structure-based docking was used to identify compounds that, after synthesis and testing, are shown to interact with AmpC β-lactamase and the D4 dopamine receptor with high affinity.

    • Jiankun Lyu
    • Sheng Wang
    • John J. Irwin
    Research
    Nature
    Volume: 566, P: 224-229
  • Functional trait data could guide predictions of species responses to environmental change. Here, the authors show that winner and loser shrub species in the warming tundra biome overlap in trait space and may therefore be difficult to predict based on commonly measured traits.

    • Mariana García Criado
    • Isla H. Myers-Smith
    • Anna-Maria Virkkala
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • The cryo-electron microscopy structure of the human adenosine A1 receptor in complex with adenosine and heterotrimeric Gi2 protein provides molecular insights into receptor and G-protein selectivity.

    • Christopher J. Draper-Joyce
    • Maryam Khoshouei
    • Arthur Christopoulos
    Research
    Nature
    Volume: 558, P: 559-563
  • X-ray crystallography and molecular dynamics simulations of the μ-opioid receptor reveal the conformational changes in the extracellular and intracellular domains of this G-protein-coupled receptor that are associated with its activation.

    • Weijiao Huang
    • Aashish Manglik
    • Brian K. Kobilka
    Research
    Nature
    Volume: 524, P: 315-321
  • G-protein-coupled receptors (GPCRs) transmit signals through intracellular heterotrimeric G proteins and arrestins. Here, Szczepek et al.present the structure of a common binding interface for Gα and arrestin on rhodopsin to shed light on key interactions that mediate transduction of specific signals through a single GPCR.

    • Michal Szczepek
    • Florent Beyrière
    • Patrick Scheerer
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-8
  • A cryo-electron structure of the µ-opioid receptor in complex with the peptide agonist DAMGO and the inhibitory G protein Gi reveals structural determinants of its G protein-binding specificity.

    • Antoine Koehl
    • Hongli Hu
    • Brian K. Kobilka
    Research
    Nature
    Volume: 558, P: 547-552
  • Tummino et al. dock 74 million molecules against the human cannabinoid-1 receptor to find uM ligands. Optimization led to a nM agonist conferring analgesia with reduced side effects in mice, highlighting its potential as a pain therapeutic and the promise of a structure-based approach.

    • Tia A. Tummino
    • Christos Iliopoulos-Tsoutsouvas
    • Brian K. Shoichet
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • G protein-coupled receptors (GPCRs) are a critical target in modern drug development across a wide range of indications. Here the authors provide a comprehensive characterization of a typical GPCR, the angiotensin II (AngII) type 1 receptor (AT1R), and provide insight into its activation mechanism that suggest avenues for the design of allosteric GPCR modulators.

    • Shaoyong Lu
    • Xinheng He
    • Jian Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • The authors present 7 cryo-EM structures of hallucinogenic and non-hallucinogenic compounds across multiple chemotypes bound to the 5-HT2A receptor, shedding light onto ligand specificity and signaling bias.

    • Ryan H. Gumpper
    • Manish K. Jain
    • Bryan L. Roth
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Recently, a class of non-catechol Dopamine D1 receptor (D1R) selective agonists with novel scaffold and improved pharmacological properties were reported. Here, authors report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 which explains the selectivity of this scaffold for D1R over other aminergic receptors and the mechanism of activating D1R.

    • Bingfa Sun
    • Dan Feng
    • Brian K. Kobilka
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • Different phosphorylation patterns created by GRK2 and GRK5 on the C-terminal tail of ACKR3 lead to distinct structural arrangements and dynamics of G-protein-coupled receptor–arrestin complexes, potentially explaining diverse cellular outcomes.

    • Qiuyan Chen
    • Christopher T. Schafer
    • John J. G. Tesmer
    Research
    Nature
    Volume: 643, P: 280-287
  • The authors show the dimeric structure of human LYCHOS (lysosomal cholesterol signaling), a fusion of a transporter and a G-protein-coupled receptor-like domain. The study uncovers unique transporter and receptor features and proposes a mechanism to couple cholesterol sensing, transport and signaling.

    • Qi Xiong
    • Zhini Zhu
    • Dianfan Li
    Research
    Nature Structural & Molecular Biology
    Volume: 32, P: 905-913
  • Transferring information on the GAIN domain is hampered by low sequence conservation. Here, authors introduce a generic residue numbering scheme for GAIN domains to facilitate information integration as demonstrated on cancer data.

    • Florian Seufert
    • Guillermo Pérez-Hernández
    • Peter W. Hildebrand
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • The apelin receptor (APJR) is a drug target for cardiovascular and metabolic health. Here, authors reveal how ligand binding, receptor dimerization, and G protein coupling cooperate to regulate APJR signaling pathway, providing insight for drug discovery.

    • Yang Yue
    • Lier Liu
    • Fei Xu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • Ligands that activate GPCRs generally do so by stabilizing a particular conformation of the transmembrane helices. Here, the authors reveal a distinct activation mechanism where a ligand instead stabilizes a particular intracellular loop conformation.

    • Alexander S. Powers
    • Aasma Khan
    • Ron O. Dror
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • This study explores apelin receptor’s role in cardiovascular function, identifying residues critical for binding through genetic variants, AlphaFold2 modelling and base editing in cardiomyocytes. Co-crystallization with biased agonist CMF-019 shows a unique binding mode versus endogenous peptides.

    • Thomas L. Williams
    • Grégory Verdon
    • Anthony P. Davenport
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-19
  • Adenosine A3 receptor (A3AR) holds promise for treating inflammatory and cancer conditions. Here, Cai et al. present cryo-EM structures of  A3AR bound to agonists CF101 and CF102, offering insights into its activation and ligand interaction, crucial for developing targeted therapies.

    • Hongmin Cai
    • Shimeng Guo
    • H. Eric Xu
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • There are ∼800 human GPCRs and 16 different Gα proteins; this study revealed the molecular details of Gα activation by GPCRs and suggests that a universal activation mechanism governs Gα activation—the details of this mechanism can explain how the GPCR–Gα system diversified rapidly, while conserving the allosteric activation mechanism.

    • Tilman Flock
    • Charles N. J. Ravarani
    • M. Madan Babu
    Research
    Nature
    Volume: 524, P: 173-179
  • A cryo-electron microscopy structure of the yeast pheromone receptor Ste2, a class D G-protein-coupled receptor, in its active state reveals that Ste2 is a homodimer that couples to two G proteins.

    • Vaithish Velazhahan
    • Ning Ma
    • Christopher G. Tate
    Research
    Nature
    Volume: 589, P: 148-153
  • The authors show G protein subtype selectivity at the β1-adrenergic receptor is driven by the binding kinetics of ternary complex formation. Bound to G protein, the receptor adopts conformations that differ from its agonist-bound solution states.

    • Andrew J. Y. Jones
    • Thomas H. Harman
    • Daniel Nietlispach
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Niacin is used to treat cardiovascular disease through its activation of the GPCR HCAR2. Here, the authors present cryo-EM structures of HCAR2 bound to niacin and other drug-like small molecules, which explain the basis of HCAR2 ligand recognition.

    • Jae-Hyun Park
    • Kouki Kawakami
    • Sam-Yong Park
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • The µ-opioid receptor is a key clinical target. Here, the authors describe nanobody NbE, a selective and high affinity antagonist, which is downsized to small cyclic peptides. The work enables unique receptor targeting based on nanobody interaction.

    • Jun Yu
    • Amit Kumar
    • Miriam Stoeber
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Cryo-EM structures of complement receptors C3aR and C5aR1 bound to their respective anaphylatoxin ligands C3a and C5a reveal insights into the conserved features and topological diversities of C3aR and C5aR1 in recognizing C3a and C5a.

    • Yue Wang
    • Weiyi Liu
    • Youwen Zhuang
    Research
    Nature Chemical Biology
    Volume: 19, P: 1351-1360
  • Bitopic functionalized ligands based on fentanyl can target the sodium ion-binding site of the mu-opioid receptor and selectively modulate downstream signalling pathways, potentially leading to safer analgesics.

    • Abdelfattah Faouzi
    • Haoqing Wang
    • Susruta Majumdar
    Research
    Nature
    Volume: 613, P: 767-774
  • Structural studies on the complex containing G-protein-coupled receptor kinase 2 (GRK2), neurotensin receptor 1 (NTSR1), Gαq and the arrestin-biased ligand SBI-553 provide insights into these interactions and a foundation for the design of arrestin-biased ligands for G-protein-coupled receptors.

    • Jia Duan
    • Heng Liu
    • H. Eric Xu
    Research
    Nature
    Volume: 620, P: 676-681