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Showing 1–50 of 55 results
Advanced filters: Author: Erica K. Sloan Clear advanced filters
  • Disparities in risk and outcomes of pediatric acute lymphoblastic leukemia (ALL) are apparent between different ancestries. Here the authors identify genetic variants with African ancestry-specific risks for developing pediatric B-cell ALL that are also linked to greater 5-year mortality risk.

    • Cindy Im
    • Andrew R. Raduski
    • Logan G. Spector
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Observations of a 3-million-year-old pre-main-sequence star with a misaligned disk reveal a giant orbiting planet; the system is ideal for studying the early formation and migration of planets.

    • Madyson G. Barber
    • Andrew W. Mann
    • Jesus Noel Villaseñor
    Research
    Nature
    Volume: 635, P: 574-577
  • A series of early-time, multiwavelength observations of an optical transient, AT2022cmc, indicate that it is a relativistic jet from a tidal disruption event originating from a supermassive black hole.

    • Igor Andreoni
    • Michael W. Coughlin
    • Jielai Zhang
    Research
    Nature
    Volume: 612, P: 430-434
  • Genetic variants associated with susceptibility to pancreatic cancer have been identified using genome wide association studies (GWAS). Here, the authors combine data from over 9000 patients and perform a meta-analysis to identify five novel loci linked to pancreatic cancer.

    • Alison P. Klein
    • Brian M. Wolpin
    • Laufey T. Amundadottir
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Memory formation requires gene transcription, but the link between synaptic activity and transcription is not fully understood. Brd4 regulates transcription in other cell types and Brd4 family inhibitors are in clinical trials for cancer. The authors show that Brd4 is important for activity-dependent gene transcription in neurons and memory consolidation.

    • Erica Korb
    • Margo Herre
    • C David Allis
    Research
    Nature Neuroscience
    Volume: 18, P: 1464-1473
  • Loss of the tumour suppressor gene PTEN leads to the activation of pro-tumourigenic signalling pathways. Here, the authors analyse sequencing data from a large cohort of colorectal cancer patients harbouring PTEN mutations and identify distinct patterns of associations with genomic and clinical features.

    • Ilya G. Serebriiskii
    • Valery Pavlov
    • Erica A. Golemis
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-17
  • Joshi, Gomes et al. employ a chemical modulation approach of the cellular interactome to a hyperconnectivity state and show association with the increased response of pancreatic cancer cell lines to specific drugs, including those that target the MAPK-pathways and PI3K-mTOR pathway. To achieve this, the authors employ chemical modulation of the interactome via epichaperome inhibition with the small molecule PU-H71.

    • Suhasini Joshi
    • Erica DaGama Gomes
    • Gabriela Chiosis
    ResearchOpen Access
    Communications Biology
    Volume: 4, P: 1-20
  • Adverse life events have been associated with reduced survival in cancer patients. Here, the authors explore the mechanism responsible and show that chronic stress in mice activates a signalling cascade in macrophages and tumour cells, which results in restructuring of the tumour lymphatic system, promoting metastasis.

    • Caroline P. Le
    • Cameron J. Nowell
    • Erica K. Sloan
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-14
  • Activating oncogenic mutations in KRAS and NRAS are common in colorectal cancer, which is a heterogenous disease. Here, the authors show that the RAS mutation spectrum is markedly different between colon and rectal cancer, and also different based on age of diagnosis and microsatellite instability.

    • Ilya G. Serebriiskii
    • Caitlin Connelly
    • Joshua E. Meyer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Competitive binding of 53BP1 and BRCA1 determines DNA repair pathway choice at double-strand breaks. New work shows that acetylation of H4K16 by TIP60 tips the balance in favor of BRCA1 by limiting 53BP1 binding, thereby promoting repair through homologous recombination over nonhomologous end joining.

    • Jiangbo Tang
    • Nam Woo Cho
    • Roger A Greenberg
    Research
    Nature Structural & Molecular Biology
    Volume: 20, P: 317-325
  • A manifold learning method called T-PHATE is developed for high-dimensional time-series data. T-PHATE is applied to brain data (functional magnetic resonance imaging) where it faithfully denoises signals and unveils latent brain-state trajectories which correspond with cognitive processing.

    • Erica L. Busch
    • Jessie Huang
    • Nicholas B. Turk-Browne
    Research
    Nature Computational Science
    Volume: 3, P: 240-253
  • Evidence is found for a distant galaxy growing inside-out within the first 700 million years of the Universe. The galaxy has a dense central core comparable in mass density to local massive ellipticals, and an extended star-forming disc.

    • William M. Baker
    • Sandro Tacchella
    • Joris Witstok
    ResearchOpen Access
    Nature Astronomy
    Volume: 9, P: 141-154
  • The inhibitor PU-H71 preferentially targets tumor-enriched Hsp90 complexes. Affinity purification using PU-H71 reveals cancer-specific protein networks in chronic myeloid leukemia and that the abundance of tumor-specific Hsp90 clients in cells can predict sensitivity to Hsp90 inhibitors.

    • Kamalika Moulick
    • James H Ahn
    • Gabriela Chiosis
    Research
    Nature Chemical Biology
    Volume: 7, P: 818-826
  • Cytoplasmic polyadenylated transcripts have been poorly characterized, particularly in cancer. Here the authors identify a lineage-specific requirement of the cytoplasmic polyadenylation binding protein 4 (CPEB4) in malignant melanoma and show that it controls melanoma drivers MITF and RAB27A.

    • Eva Pérez-Guijarro
    • Panagiotis Karras
    • María S. Soengas
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-17
  • Longitudinal genomic and transcriptomic profiling of 1,143 patients with multiple myeloma by the Relating Clinical Outcomes in Multiple Myeloma to Personal Assessment of Genetic Profile study yields an improved copy number and gene expression subtype scheme, most notably a high-risk proliferative subtype associated with complete loss of RB1 or MAX.

    • Sheri Skerget
    • Daniel Penaherrera
    • Jonathan J. Keats
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 1878-1889
  • This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease.

    • Ian Dunham
    • Anshul Kundaje
    • Ewan Birney
    ResearchOpen Access
    Nature
    Volume: 489, P: 57-74
  • ctDNA is a known poor prognostic factor for multiple cancer types, but variant-specificity is unknown. Here, the authors show variant-specific association of ctKRAS levels with survival in previously untreated metastatic pancreatic ductal adenocarcinoma patients in multiple cohorts.

    • Jacob E. Till
    • Lee McDaniel
    • Erica L. Carpenter
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The spectral properties of a short gamma-ray burst indicate that, contrary to expectations, it arose from the collapse of a massive star rather than from a compact binary merger. This discovery also confirms that most collapsars do not produce ultra-relativistic jets.

    • Tomás Ahumada
    • Leo P. Singer
    • Azamat F. Valeev
    Research
    Nature Astronomy
    Volume: 5, P: 917-927
  • The authors report 1.3 mm observations of dust emission from strongly lensed galaxies where star formation is quenched, demonstrating that gas depletion is responsible for the cessation of star formation in some high-redshift galaxies.

    • Katherine E. Whitaker
    • Christina C. Williams
    • Francesco Valentino
    Research
    Nature
    Volume: 597, P: 485-488
  • The tidal disruption event AT2019dsg is probably associated with a high-energy neutrino, suggesting that such events can contribute to the cosmic neutrino flux. The electromagnetic emission is explained in terms of a central engine, a photosphere and an extended synchrotron-emitting outflow.

    • Robert Stein
    • Sjoert van Velzen
    • Yuhan Yao
    Research
    Nature Astronomy
    Volume: 5, P: 510-518
  • The structure of the yeast nuclear pore complex, determined at sub-nanometre precision using an integrative approach that combines a wide range of data, reveals details of its architecture, transport mechanism and evolutionary origins.

    • Seung Joong Kim
    • Javier Fernandez-Martinez
    • Michael P. Rout
    Research
    Nature
    Volume: 555, P: 475-482
  • Jones et al. examine the generalizability of the valence–dominance model of social judgements of faces in 41 countries across 11 world regions. They find evidence of both generalizability and variation, depending on the analytical method.

    • Benedict C. Jones
    • Lisa M. DeBruine
    • Nicholas A. Coles
    Research
    Nature Human Behaviour
    Volume: 5, P: 159-169
  • James Webb Space Telescope early release observations used to search for intrinsically red galaxies from the first 750 million years of cosmic history find six candidate massive galaxies, possibly including one of roughly 1011 solar masses.

    • Ivo Labbé
    • Pieter van Dokkum
    • Bingjie Wang
    Research
    Nature
    Volume: 616, P: 266-269
  • Microbes inhabit built environments and could contribute to degradation of surfaces especially in damp conditions. Here the authors explore how communities of microbes and their metabolites affect four types of built surfaces under varying environmental conditions.

    • Simon Lax
    • Cesar Cardona
    • Jack A. Gilbert
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • In this paper, Korb and colleagues find that Arc can shuttle in and out of the nucleus in an activity-dependent manner. The authors further demonstrate that the nuclear translocation of Arc participates in homeostatic plasticity by promoting the formation of PML nuclear bodies, which in turn decreases GluA1 transcription, eventually contributing to the downscaling of synaptic strength.

    • Erica Korb
    • Carol L Wilkinson
    • Steven Finkbeiner
    Research
    Nature Neuroscience
    Volume: 16, P: 874-883
  • Clinical exome and transcriptome sequencing of 500 adult patients with metastatic solid tumours of diverse lineage and biopsy site, as part of the Michigan Oncology Sequencing (MI-ONCOSEQ) Program.

    • Dan R. Robinson
    • Yi-Mi Wu
    • Arul M. Chinnaiyan
    Research
    Nature
    Volume: 548, P: 297-303
  • Visible-light-mediated photocatalytic generation of carbon-centred radicals from alkyl, alkenyl and aryl iodides, which then undergo subsequent hydrogen-atom abstraction or reductive cyclizations, is reported. The protocol is characterized by the use of inexpensive reagents, mild conditions, exceptional functional group tolerance, and good to high yields.

    • John D. Nguyen
    • Erica M. D'Amato
    • Corey R. J. Stephenson
    Research
    Nature Chemistry
    Volume: 4, P: 854-859
  • A single-cell approach is used to follow the heritable stochastic changes to DNA methylation that occur in primary chronic lymphocytic leukaemia and healthy B cells, allowing the tracing of cell lineage histories and evolution during treatment with ibrutinib.

    • Federico Gaiti
    • Ronan Chaligne
    • Dan A. Landau
    Research
    Nature
    Volume: 569, P: 576-580
  • Drinking behaviour in mice is regulated by a signal derived from the water and salt content of the gastrointestinal tract that is transmitted to forebrain neurons that control thirst via the vagus nerve.

    • Christopher A. Zimmerman
    • Erica L. Huey
    • Zachary A. Knight
    Research
    Nature
    Volume: 568, P: 98-102
  • Feedback from the oral cavity to thirst-promoting neurons in the subfornical organ (SFO) during eating and drinking is integrated with information about blood composition, providing a prediction of how oral consumption will affect fluid balance and leading to changes in behaviour.

    • Christopher A. Zimmerman
    • Yen-Chu Lin
    • Zachary A. Knight
    Research
    Nature
    Volume: 537, P: 680-684
  • As guidelines, therapies and literature on cancer variants expand, the lack of consensus variant interpretations impedes clinical applications. CIViC is a public-domain, crowd-sourced and adaptable knowledgebase of evidence for the clinical interpretation of variants in cancer, designed to reduce barriers to knowledge sharing and alleviate the variant-interpretation bottleneck.

    • Kilannin Krysiak
    • Arpad M. Danos
    • Malachi Griffith
    Comments & Opinion
    Nature Cancer
    Volume: 3, P: 522-525
  • Whole-genome whole-population sequencing is used to examine the dynamics of genome-sequence evolution in Saccharomyces cerevisiae populations for 1,000 generations; this reveals patterns of sequence evolution driven by pervasive genetic hitchhiking and interference, and shows that beneficial mutations that escape drift and increase in frequency typically occur in cohorts.

    • Gregory I. Lang
    • Daniel P. Rice
    • Michael M. Desai
    Research
    Nature
    Volume: 500, P: 571-574
  • Genetically engineered ‘lymphoreporter’ mouse strains are used to track melanoma dissemination in vivo, identifying midkine as a tumour-secreted factor that acts at a distance, preparing pre-metastatic niches and serving as an indicator of poor prognosis in patients.

    • David Olmeda
    • Daniela Cerezo-Wallis
    • María S. Soengas
    Research
    Nature
    Volume: 546, P: 676-680
  • Here, the authors summarize the evidence concerning the neurological health of individuals affected by the 11 September 2001 terrorist attacks and present the outcome of a meeting convened by the US National Institute for Occupational Safety and Health that aimed to generate recommendations for future research in this population.

    • Sean A. P. Clouston
    • Charles B. Hall
    • Benjamin J. Luft
    Reviews
    Nature Reviews Neurology
    Volume: 18, P: 103-116