Nature Search

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

This Consensus Statement presents the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines.

Julia M. Kelliher
Chloe Mirzayi
Emiley A. Eloe-Fadrosh
Reviews01 Dec 2025
Nature Microbiology

Volume: 10, P: 3059-3068
Precisely defining disease variant effects in CRISPR-edited single cells

A plate-based assay called CRAFTseq has been developed that uses ‘multi-omic’ single-cell RNA sequencing and direct genotyping of CRISPR edits to test the functional effects of genetic variants on cell state and function.

Yuriy Baglaenko
Zepeng Mu
Soumya Raychaudhuri
ResearchOpen Access23 Jul 2025
Nature

Volume: 646, P: 117-125
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Mycorrhizal symbioses have evolved repeatedly in diverse fungal lineages. A large phylogenomic analysis sheds light on genomic changes associated with transitions from saprotrophy to symbiosis, including divergent genetic innovations underlying the convergent origins of the ectomycorrhizal guild.

Shingo Miyauchi
Enikő Kiss
Francis M. Martin
ResearchOpen Access12 Oct 2020
Nature Communications

Volume: 11, P: 1-17
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi

Probing the evolution of bacterial endosymbionts in Mucoromycota - Mollicutes-related endobacteria (MRE) - reveals that the genera Linnemannia and Benniella acquired MRE after host divergence from a common ancestor.

Reid Longley
Aaron Robinson
Gregory Bonito
ResearchOpen Access18 Sept 2023
Communications Biology

Volume: 6, P: 1-13
Non-target impacts of fungicide disturbance on phyllosphere yeasts in conventional and no-till management

Zachary A. Noel
Reid Longley
Gregory Bonito
ResearchOpen Access23 Feb 2022
ISME Communications

Volume: 2, P: 1-10
Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle

Alessandro Desirò
Zhen Hao
Gregory Bonito
Research23 Feb 2018
The ISME Journal

Volume: 12, P: 1743-1757
Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition

Ecotype-specific steroidal saponins and diterpenoids from Panicum virgatum (switchgrass) influence growth inhibition of fungal species previously associated with the rhizosphere of cultivars of this plant.

Xingxing Li
Ming-Yi Chou
Robert L. Last
ResearchOpen Access07 Sept 2023
Communications Biology

Volume: 6, P: 1-12

Search

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Precisely defining disease variant effects in CRISPR-edited single cells

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi

Non-target impacts of fungicide disturbance on phyllosphere yeasts in conventional and no-till management

Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle

Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition

Search

Quick links

Search

Filter By:

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Precisely defining disease variant effects in CRISPR-edited single cells

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi

Non-target impacts of fungicide disturbance on phyllosphere yeasts in conventional and no-till management

Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle

Anti-fungal bioactive terpenoids in the bioenergy crop switchgrass (Panicum virgatum) may contribute to ecotype-specific microbiome composition

Search

Quick links