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Showing 1–6 of 6 results
Advanced filters: Author: Isaac Virshup Clear advanced filters

  • SpatialData is a user-friendly computational framework for exploring, analyzing, annotating, aligning and storing spatial omics data that can seamlessly handle large multimodal datasets.

    • Luca Marconato
    • Giovanni Palla
    • Oliver Stegle
    ResearchOpen Access
    Nature Methods
    Volume: 22, P: 58-62

  • Squidpy enables comprehensive analysis and visualization of spatial omics data and image with high efficiency.

    • Giovanni Palla
    • Hannah Spitzer
    • Fabian J. Theis
    ResearchOpen Access
    Nature Methods
    Volume: 19, P: 171-178

  • Bower et al. describe a population of mural lymphatic endothelial cells found along meningeal blood vessels in the adult zebrafish. These mural cells are distinct from meningeal lymphatic vessel cells but form by developmental lymphangiogenesis. They take up low-density lipoproteins from the bloodstream and can modulate angiogenesis during meningeal vascularization.

    • Neil I Bower
    • Katarzyna Koltowska
    • Benjamin M Hogan
    Research
    Nature Neuroscience
    Volume: 20, P: 774-783

  • Incorporating a series of analytical steps, from data extraction and quality control to the generation of low-dimensional representations and to longitudinal analyses, an open-source software is proposed to standardize current electronic health record data processing and analysis pipelines.

    • Lukas Heumos
    • Philipp Ehmele
    • Fabian J. Theis
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 3369-3380

  • Practitioners in the field of single-cell omics are now faced with diverse options for analytical tools to process and integrate data from various molecular modalities. In an Expert Recommendation article, the authors provide guidance on robust single-cell data analysis, including choices of best-performing tools from benchmarking studies.

    • Lukas Heumos
    • Anna C. Schaar
    • Fabian J. Theis
    Reviews
    Nature Reviews Genetics
    Volume: 24, P: 550-572