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Showing 1–22 of 22 results
Advanced filters: Author: Itay Tirosh Clear advanced filters
  • In this Journal Club, Itay Tirosh highlights a 2011 publication by Gupta et al., which showed that cells undergo frequent stochastic transitions between distinct states in breast cancer cell lines.

    • Itay Tirosh
    Research Highlights
    Nature Reviews Genetics
    Volume: 23, P: 582-583
  • Integrated single-cell transcriptomic and genetic characterization of 121 adult glioblastomas identifies heterogeneity at cell type, cell state and baseline expression program levels associated with specific mutations that form three stereotypical ecosystems.

    • Masashi Nomura
    • Avishay Spitzer
    • Itay Tirosh
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 1155-1167
  • A study identifies 41 consensus gene expression meta-programs that are coordinately upregulated in subpopulations of malignant cells across tumour types, providing a comprehensive picture of hallmarks of intratumour heterogeneity.

    • Avishai Gavish
    • Michael Tyler
    • Itay Tirosh
    Research
    Nature
    Volume: 618, P: 598-606
  • Single-cell analysis of head and neck squamous cell carcinoma (HNSCC), specifically from human papillomavirus (HPV)-positive and HPV-negative oropharynx tumors, reveals high levels of inter- and intratumoral heterogeneity. Patterns of HPV gene expression were divergent within HPV-positive tumors, with corresponding functional effects on treatment resistance.

    • Sidharth V. Puram
    • Michael Mints
    • Itay Tirosh
    Research
    Nature Genetics
    Volume: 55, P: 640-650
  • Single-cell transcriptomics analysis of malignant ascites samples from patients with high-grade serous ovarian cancer reveals inter- and intra-patient heterogeneity in malignant cells, cancer-associated fibroblasts and macrophages.

    • Benjamin Izar
    • Itay Tirosh
    • Aviv Regev
    Research
    Nature Medicine
    Volume: 26, P: 1271-1279
  • Treatment with the oncolytic herpes virus CAN-3110 is associated with improved survival responses in patients with recurrent glioblastoma, particularly in individuals who are seropositive for HSV1.

    • Alexander L. Ling
    • Isaac H. Solomon
    • E. Antonio Chiocca
    ResearchOpen Access
    Nature
    Volume: 623, P: 157-166
  • Single-cell RNA sequencing has transformed our understanding of the biology of cancer cells and that of nonmalignant cells present in the tumour microenvironment. However, how this new knowledge can be translated into improved outcomes for patients often remains uncertain. In this Review, the authors describe the results of single-cell RNA analyses of samples from patients with cancer with an emphasis on how the findings of these studies have, or are anticipated to lead to, improved patient outcomes, with a focus on four key aspects: refinement of tumour subtyping, characterization of treatment-induced changes, identification of gene expression programmes predictive of treatment response and resistance, and the discovery of novel therapeutic targets.

    • Emily Boxer
    • Nisan Feigin
    • Itay Tirosh
    Reviews
    Nature Reviews Clinical Oncology
    Volume: 22, P: 315-326
  • A comprehensive spatial expression atlas of the adult human proximal small intestine reveals branched villi, immune activation at the villus tip, and a switch of migrating enterocytes from lipid droplet assembly and iron uptake at the villus bottom to chylomicron biosynthesis and iron release at the tip.

    • Yotam Harnik
    • Oran Yakubovsky
    • Shalev Itzkovitz
    Research
    Nature
    Volume: 632, P: 1101-1109
  • Neoantigen-targeting vaccines are a feasible therapy for tumours with a low mutation burden and immunologically ‘cold’ tumour microenvironment, as neoantigen-specific T cells from the peripheral blood migrate into intracranial glioblastoma, thereby altering the immune milieu of the glioblastoma.

    • Derin B. Keskin
    • Annabelle J. Anandappa
    • David A. Reardon
    Research
    Nature
    Volume: 565, P: 234-239
  • Endothelial cells from vascular-dependent central nervous system (CNS) diseases reveal reactivated fetal pathways, display common hallmarks of disease — including a partial loss of arteriovenous specification and CNS-specific properties as well as an upregulation of MHC class II receptors — and play a key role in the human brain neurovascular unit across development, adulthood and disease.

    • Thomas Wälchli
    • Moheb Ghobrial
    • Ivan Radovanovic
    ResearchOpen Access
    Nature
    Volume: 632, P: 603-613
  • Choi et al. highlight the centrality of glycolysis in squamous cell carcinoma, revealing the glycolysis-dampening tumour suppressor role of Sirt6, and identifying a subset of highly glycolytic tumour-propagating cells with elevated antioxidant capacity.

    • Jee-Eun Choi
    • Carlos Sebastian
    • Raul Mostoslavsky
    Research
    Nature Metabolism
    Volume: 3, P: 182-195
  • In glioma, malignant synapses hijack mechanisms of synaptic plasticity to increase glutamate-dependent currents in tumour cells and the formation of neuron–glioma synapses, thereby promoting tumour proliferation and progression.

    • Kathryn R. Taylor
    • Tara Barron
    • Michelle Monje
    ResearchOpen Access
    Nature
    Volume: 623, P: 366-374
  • Large-scale screens of chemical and genetic vulnerabilities in cancer are typically limited to simple readouts of cell viability. Here, the authors develop a method for profiling post-perturbation transcriptional responses across large pools of cancer cell lines, enabling deep characterization of shared and context-specific responses.

    • James M. McFarland
    • Brenton R. Paolella
    • Aviad Tsherniak
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Profiling of 53,193 individual epithelial cells from the mouse small intestine identifies previously unknown cell subtypes and corresponding gene markers, providing insight into gut homeostasis and response to pathogens.

    • Adam L. Haber
    • Moshe Biton
    • Aviv Regev
    Research
    Nature
    Volume: 551, P: 333-339