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Showing 1–50 of 76 results
Advanced filters: Author: Jacob N. Sanders Clear advanced filters
  • Genetic analyses in more than 15,000 individuals from across the Americas, including individuals with autism and family members, define the genetic landscape of autism in Latin American populations and identify significant overlap with other ancestries.

    • Marina Natividad Avila
    • Seulgi Jung
    • Joseph D. Buxbaum
    ResearchOpen Access
    Nature Medicine
    P: 1-11
  • The APOE-ε4 allele is the strongest genetic risk factor for late-onset Alzheimer’s disease, but it is not deterministic. Here, the authors show that common genetic variation changes how APOE-ε4 influences cognition.

    • Alex G. Contreras
    • Skylar Walters
    • Timothy J. Hohman
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-17
  • Biocatalysis of the chemotherapy drug, doxorubicin, relies on the cytochrome P450 DoxA, which is inefficient. Here, the authors ameliorated the biosynthetic limitations by identifying DoxA redox partners and DnrV, which prevents product inhibition, helping improve microbial production.

    • Arina Koroleva
    • Erika Artukka
    • Mikko Metsä-Ketelä
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-13
  • Antony et al. examine the link between multi-event long-term surprises and memory formation. Combined analysis of basketball fan questionnaires and public NBA data shows that surprising events are associated with better memory across timescales.

    • James W. Antony
    • Jacob Van Dam
    • Kelly A. Bennion
    Research
    Nature Human Behaviour
    Volume: 7, P: 2152-2168
  • Jake Gratten and colleagues discuss challenges in interpreting the role of de novo mutations in neuropsychiatric and other complex diseases. They argue that the burden of proof for causality for a single de novo mutation must be set high and that curation of de novo mutations and their associated phenotypes in databases will be critical for the robust interpretation of exome sequencing studies.

    • Jacob Gratten
    • Peter M Visscher
    • Naomi R Wray
    Reviews
    Nature Genetics
    Volume: 45, P: 234-238
  • Genomic analyses applied to 14 childhood- and adult-onset psychiatric disorders identifies five underlying genomic factors that explain the majority of the genetic variance of the individual disorders.

    • Andrew D. Grotzinger
    • Josefin Werme
    • Jordan W. Smoller
    ResearchOpen Access
    Nature
    Volume: 649, P: 406-415
  • Bicyclo[1.1.1]pentanes are of interest to the pharmaceutical and chemical communities, due largely to their metabolic stability and potential as bioisosteres. Here the enantioselective C–H activation of these carbocycles is reported, giving access to enantioenriched, substituted products while maintaining the carbocyclic framework.

    • Zachary J. Garlets
    • Jacob N. Sanders
    • Huw M. L. Davies
    Research
    Nature Catalysis
    Volume: 3, P: 351-357
  • Analysis of whole-genome sequence data from 3,474 families finds an excess of private, likely gene-disrupting variants in individuals with autism. These variants are under purifying selection and suggest candidate genes not previously associated with autism.

    • Amy B. Wilfert
    • Tychele N. Turner
    • Evan E. Eichler
    Research
    Nature Genetics
    Volume: 53, P: 1125-1134
  • Strong genetic evidence points to a significant role for heterozygous mutations to general chromatin remodeling factors, such as CHD8, in autism. Gompers et al. combine genomic, neuroanatomical and behavioral approaches to present an initial integrative picture of transcriptional mechanisms and widespread impacts of Chd8 haploinsufficiency across brain development in mice.

    • Andrea L Gompers
    • Linda Su-Feher
    • Alex S Nord
    Research
    Nature Neuroscience
    Volume: 20, P: 1062-1073
  • A genome-wide association study including over 76,000 individuals with schizophrenia and over 243,000 control individuals identifies common variant associations at 287 genomic loci, and further fine-mapping analyses highlight the importance of genes involved in synaptic processes.

    • Vassily Trubetskoy
    • Antonio F. Pardiñas
    • Jim van Os
    Research
    Nature
    Volume: 604, P: 502-508
  • Genomic and phenomic screens of 827 wheat landraces from the A. E. Watkins collection provide insight into the wheat population genetic background, unlocking many agronomic traits and revealing haplotypes that could potentially be used to improve modern wheat cultivars.

    • Shifeng Cheng
    • Cong Feng
    • Simon Griffiths
    ResearchOpen Access
    Nature
    Volume: 632, P: 823-831
  • Gut bacteria are prevalent across insects including ants, but their precise roles are often unclear. Here, Hu et al. show that microbes aid ants by recycling nitrogen into bio-available amino acids. This function is conserved across the turtle ants, suggesting an ancient nutritional mutualism.

    • Yi Hu
    • Jon G. Sanders
    • Jacob A. Russell
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-14
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436
  • Engineering of small-molecule-responsive RNA-binding proteins enables chemical regulation of modified mRNA or RNA replicon expression within mammalian cells for applications in synthetic circuit design and RNA-centered therapeutics.

    • Tyler E. Wagner
    • Jacob R. Becraft
    • Ron Weiss
    Research
    Nature Chemical Biology
    Volume: 14, P: 1043-1050
  • A Diels–Alderase that catalyses the inherently disfavoured cycloaddition and forms a bicyclo[2.2.2]diazaoctane scaffold with a strict α-anti-selectivity has now been discovered. This Diels–Alderase, called CtdP, is an NmrA-like protein. Isotopic labelling, structural biology and computational studies reveal that the CtdP-catalysed Diels–Alder reaction involves a NADP+/NADPH-dependent redox mechanism.

    • Zhiwen Liu
    • Sebastian Rivera
    • Xue Gao
    Research
    Nature Chemistry
    Volume: 15, P: 526-534
  • Stratified medicine promises to tailor treatment for individual patients, however it remains a major challenge to leverage genetic risk data to aid patient stratification. Here the authors introduce an approach to stratify individuals based on the aggregated impact of their genetic risk factor profiles on tissue-specific gene expression levels, and highlight its ability to identify biologically meaningful and clinically actionable patient subgroups, supporting the notion of different patient ‘biotypes’ characterized by partially distinct disease mechanisms.

    • Lucia Trastulla
    • Georgii Dolgalev
    • Michael J. Ziller
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-28
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • In place of the expected flavin-C4a-(hydro)peroxide intermediate, certain flavin monooxygenases such as RutA instead use a flavin-N5-peroxide intermediate as a catalytic nucleophile, enabling chemistry not accessible to canonical monooxygenases.

    • Arne Matthews
    • Raspudin Saleem-Batcha
    • Robin Teufel
    Research
    Nature Chemical Biology
    Volume: 16, P: 556-563
  • A genetic study identifies hundreds of loci associated with risk tolerance and risky behaviors, finds evidence of substantial shared genetic influences across these phenotypes, and implicates genes involved in neurotransmission.

    • Richard Karlsson Linnér
    • Pietro Biroli
    • Jonathan P. Beauchamp
    Research
    Nature Genetics
    Volume: 51, P: 245-257
  • A family of host-derived bile acid–methylcysteamine conjugates functions as FXR antagonists, forming part of a microbiota-dependent metabolic network that regulates FXR-dependent physiology.

    • Tae Hyung Won
    • Mohammad Arifuzzaman
    • Frank C. Schroeder
    Research
    Nature
    Volume: 638, P: 216-224
  • Nanoparticles are a promising approach to increase immunogenicity of protein antigens for vaccines. Here, Brouwer et al. design self-assembling, two-component protein NPs that present native-like SOSIP trimers of HIV envelope protein and determine immunogenicity in a small animal model.

    • Philip J. M. Brouwer
    • Aleksandar Antanasijevic
    • Rogier W. Sanders
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • The CIP2A–TOPBP1 complex tethers fragmented chromosomes from micronuclei for asymmetric mitotic inheritance, explaining distinct patterns of chromosome rearrangements in cancers and genomic disorders.

    • Yu-Fen Lin
    • Qing Hu
    • Peter Ly
    ResearchOpen Access
    Nature
    Volume: 618, P: 1041-1048
  • Most genomics research cohorts are made up of participants of European ancestry, which limits the reach of precision medicine. Here, the authors describe the genetic diversity in the All of Us research program, which is enriched in underrepresented ancestries.

    • Shivam Sharma
    • Shashwat Deepali Nagar
    • I. King Jordan
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • The complete biosynthesis of the fungal indole alkaloid malbrancheamide, which culminates in an intramolecular [4+2] hetero-Diels–Alder cyclization to produce the bicyclo[2.2.2]diazaoctane scaffold, has now been discovered. Chemical synthesis and protein structural analysis were used to provide mechanistic insight into this enzyme-dependent diastereo- and enantioselective cycloaddition.

    • Qingyun Dan
    • Sean A. Newmister
    • Robert M. Williams
    Research
    Nature Chemistry
    Volume: 11, P: 972-980
  • Half of all pregnancies are unintended; thus, existing family planning options are inadequate. This proof-of-concept study validates an on-demand contraception strategy for men, showing high effectiveness in quickly and temporarily reducing male fertility in mice.

    • Melanie Balbach
    • Thomas Rossetti
    • Lonny R. Levin
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • Genomic aberrations disrupting chromosome spatial domains can lead to disease. Here, the authors investigate the impact of DNA damage response and repair on 3D genome folding, comparing wild type cells and ataxia telangiectasia mutated patient cells, and characterise both cell type-specific and shared changes to genome organization during the response to damage.

    • Jacob T. Sanders
    • Trevor F. Freeman
    • Rachel Patton McCord
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Subsets of ILC3s upregulate the immunoregulatory checkpoint molecule CTLA-4 after stimulation in a microbiota-dependent manner, and advances to support CTLA-4+ ILC3s may represent a treatment opportunity in IL-23-driven chronic inflammation.

    • Anees Ahmed
    • Ann M. Joseph
    • Gregory F. Sonnenberg
    Research
    Nature
    Volume: 630, P: 976-983
  • Dominic Kwiatkowski and colleagues report analysis of genetic variation in 826 Plasmodium falciparum samples collected from 10 locations in West Africa and southeast Asia. They characterize the population structure of this parasite in Cambodia and find evidence for multiple distinct subpopulations showing high levels of genetic differentiation and artemisinin resistance.

    • Olivo Miotto
    • Jacob Almagro-Garcia
    • Dominic P Kwiatkowski
    Research
    Nature Genetics
    Volume: 45, P: 648-655
  • The CNV analysis group of the Psychiatric Genomic Consortium analyzes a large schizophrenia cohort to examine genomic copy number variants (CNVs) and disease risk. They find an enrichment of CNV burden in cases versus controls and identify 8 genome-wide significant loci as well as novel suggestive loci conferring either risk or protection to schizophrenia.

    • Christian R Marshall
    • Daniel P Howrigan
    • Jonathan Sebat
    Research
    Nature Genetics
    Volume: 49, P: 27-35
  • The TRPV1 ion channel is a heat-sensing receptor that is also activated by vanilloid compounds, but the molecular underpinnings of thermosensing have remained elusive. Here authors use in solution NMR on the isolated human TRPV1 S1-S4 domain and show that this domain undergoes a non-denaturing temperature-dependent transition with a high thermosensitivity.

    • Minjoo Kim
    • Nicholas J. Sisco
    • Wade D. Van Horn
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • Sexual dimorphism in genetic vulnerability to schizophrenia, systemic lupus erythematosus and Sjögren’s syndrome is linked to differential protein abundance from alleles of complement component 4.

    • Nolan Kamitaki
    • Aswin Sekar
    • Steven A. McCarroll
    Research
    Nature
    Volume: 582, P: 577-581
  • Elise Robinson and colleagues present the polygenic transmission disequilibrium test (pTDT) for evaluating transmission of polygenic risk in family-based study designs. The authors apply pTDT to a cohort of autism spectrum disorder (ASD) families and find that common polygenic variation acts additively with de novo variants to contribute to ASD risk.

    • Daniel J Weiner
    • Emilie M Wigdor
    • Elise B Robinson
    Research
    Nature Genetics
    Volume: 49, P: 978-985
  • Better analytical methods are needed to extract biological meaning from genome-wide association studies (GWAS) of psychiatric disorders. Here the authors take GWAS data from over 60,000 subjects, including patients with schizophrenia, bipolar disorder and major depression, and identify common etiological pathways shared amongst them.

    • Colm O'Dushlaine
    • Lizzy Rossin
    • Gerome Breen
    Research
    Nature Neuroscience
    Volume: 18, P: 199-209
  • The structure of a Stig cyclase, HpiC1, reveals how it catalyzes Cope rearrangement and 6-exo-trig cyclization, including how it controls the position of electrophilic aromatic substation that distinguishes hapalindole from fischerindole alkaloids.

    • Sean A. Newmister
    • Shasha Li
    • David H. Sherman
    Research
    Nature Chemical Biology
    Volume: 14, P: 345-351
  • As phase 1 of the Earth Microbiome Project, analysis of 16S ribosomal RNA sequences from more than 27,000 environmental samples delivers a global picture of the basic structure and drivers of microbial distribution.

    • Luke R. Thompson
    • Jon G. Sanders
    • Hongxia Zhao
    ResearchOpen Access
    Nature
    Volume: 551, P: 457-463
  • Catalyst-controlled site selectivity without relying on the influence of a directing group within the substrate is a major challenge in C–H functionalization. Now a catalyst is described that selectively functionalizes non-activated primary C–H bonds in the presence of a variety of other C–H bonds and functional groups.

    • Kuangbiao Liao
    • Yun-Fang Yang
    • Huw M. L. Davies
    Research
    Nature Chemistry
    Volume: 10, P: 1048-1055